LOCUS HQ191285 2402 bp DNA linear ENV 13-NOV-2010 DEFINITION Uncultured Chlorophyta clone PA2009E25 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. ACCESSION HQ191285 VERSION HQ191285.1 KEYWORDS ENV. SOURCE uncultured Chlorophyta ORGANISM uncultured Chlorophyta Eukaryota; Viridiplantae; Chlorophyta; environmental samples. REFERENCE 1 (bases 1 to 2402) AUTHORS Monchy,S., Sanciu,G., Jobard,M., Rasconi,S., Chabe,M., Niquil,N., Christaki,U., Viscogliosi,E. and Sime-ngando,T. TITLE Diversity, quantification and biogeography of fungal communities in aquatic ecosystems: 18S rDNA cloning/sequencing and pyrosequencing complementary approaches JOURNAL Unpublished REFERENCE 2 (bases 1 to 2402) AUTHORS Monchy,S., Sanciu,G., Jobard,M., Rasconi,S., Chabe,M., Niquil,N., Christaki,U., Viscogliosi,E. and Sime-ngando,T. TITLE Direct Submission JOURNAL Submitted (27-AUG-2010) Universite Blaise-Pascal, Clermont-Ferrand II, LMGE, Laboratoire Microorganismes: Genome et Environnement, 24 av. des Landais, Aubiere 63177, France FEATURES Location/Qualifiers source 1..2402 /organism="uncultured Chlorophyta" /mol_type="genomic DNA" /isolation_source="meromictic, dimictic and oligo-mesotrophic lake" /db_xref="taxon:171245" /clone="PA2009E25" /environmental_sample /country="France: Massif Central, Lake Pavin" /lat_lon="45.50 N 2.88 E" /PCR_primers="fwd_name: NS1, fwd_seq: gtagtcatatgcttgtctc, rev_name: ITS4, rev_seq: ttcctccgcttattgatatgc" misc_RNA 1..>2402 /note="contains 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, and 28S ribosomal RNA" BASE COUNT 565 a 564 c 661 g 612 t ORIGIN 1 aaagattaag ccatgcatgt ctaagtataa actgcttata ctgtgaaact gcgaatggct 61 cattaaatca gttatagttt atttgatggt acctctactc ggataaccgt agtaattcta 121 gagctaatac gtgcgtaaat cccgacttct ggaagggacg tatttattag ataaaaggcc 181 agccgtctca cgacgacctg cgttgactca tgataacttc acgaatcgca tgggcttgcc 241 ccggcgatgt ttcattcaaa tttctgccct atcaactttc gatggtagga tagaggccta 301 ccatggtggt aacgggtgac ggaggattag ggttcgattc cggagaggga gcctgagaaa 361 cggctaccac atccaaggaa ggcagcaggc gcgcaaatta cccaatcccg acacggggag 421 gtagtgacga taaataacaa taccgggcgt tcaacgtctg gtaattggaa tgggtacaat 481 ctaaatccct taacgaggat ccattggagg gcaagtctgg tgccagcagc cgcggtaatt 541 ccagctccaa tagcgtatat ttaagttgtt gcagttaaaa agctcgtagt tggatttcgg 601 gcgggtcgcg gcggtccgcc tctggtgtgc actgccgtgg tccgtctttc tgtcgaggac 661 gggctcctgg gctttactgt ctgggactcg ggctcgacga ggttactttg agtaaattag 721 agtgttcaaa gcaggcgatc gccctgaata cattagcatg gaatagcacg ataggactct 781 gacctatctt gctggtctgt aggaccggag taatgattaa gagggacagt cgggggcatt 841 cgtatttcat tgtcagaggt gaaattcttg gatttatgaa agacgaactt ctgcgaaagc 901 atttgccaag gatgttttca ttgatcaaga acgaaagttg ggggctcgaa gacgattaga 961 taccgtcgta gtctcaacca taaacgattc cgaccaggga ttggcgagcg ttcttttgat 1021 gacctcgcca gcaccttgag agaaatcaga gtctttgggt tccgggggga gtatggtcgc 1081 aaggctgaaa cttaaaggaa ttgacggaag ggcaccacca ggcgtggagc ctgcggctta 1141 atttgactca acacgggaaa acttaccagg tccagacacg gggatgataa acagattgag 1201 agctcttttt tgattctgtg ggtggtggtg catggccgtt cttagttggt gggttgcctt 1261 gtcaggttga ttccggtaac gaacgagacc tcagcctgct aaatagtcac gtgtcctttt 1321 tggatacgcc tggcttctta gagggactat tgtcgtttag gcaatggaag tgtgaggcaa 1381 taacaggtct gtgatgccct tagatgttct gggccgcacg cgcgctacac tgatgcattc 1441 aacgagccta tccttggccg agaggtccgg gtaatctttg aaactgcatc gtgatgggga 1501 tagattattg caattactag tcttcaacga ggaatgccta gtaatcgcga gtcatcagct 1561 cgcgttgatt acgtccctgc cctttgtaca caccgcccgt cgctcctacc gattgggtgt 1621 gctggtgaag tgttcggatt ggccccgggg cgtggcaaca cgctccggag ccgaaaagat 1681 cattaaaccc tcccacctag aagaaggaga agtcgtaaca aggtttccgt aggtgaacct 1741 gcggaaggat cattgaatct atcaacaacc acacccgtga acttttcgtc ggccccctgg 1801 ttggattggg tcaccgatcc gacttgtggt gccgggttgc gatcgctgtt tgggggtccc 1861 cctcggtggc gatacacgat ccggcagggg gctcggcgcg ttttgtcggc gcgtcgagtc 1921 atcggcccct tttttctttt tactcccaca tacttttatc tgaagaaccg tgtgaccggc 1981 ttggccgtat cacacaccaa cgaagacaac tctcaacaac ggatatcttg gctctcgcaa 2041 cgatgaagaa cgcagcgaaa tgcgatacgt aatgtgaatt gtagaattcc gtgaatcatc 2101 aaatctttga acgcatattg cgctcgaagc cccggcttag agcatgtctg cctcagcgtc 2161 gatgtatctc tcaccccacc tctccccgga ggcgtgcggg tggacctggt ggtcccggcg 2221 agcttcggtt cggcgggtcc actgaagctg agaggctatt tcaggaccgt catgggccgc 2281 atctaggtag gtagctcacg ctccatattt ggatgttggc ttggtcttgg cttttgtgcc 2341 ttcaatcggg aaccccatac attttcgacc tgagctcagg caagaacacc cgctgaactt 2401 aa //