LOCUS HQ191287 2271 bp DNA linear ENV 13-NOV-2010 DEFINITION Uncultured Dikarya clone PA2009E3 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. ACCESSION HQ191287 VERSION HQ191287.1 KEYWORDS ENV. SOURCE uncultured Dikarya ORGANISM uncultured Dikarya Eukaryota; Fungi; Dikarya; environmental samples. REFERENCE 1 (bases 1 to 2271) AUTHORS Monchy,S., Sanciu,G., Jobard,M., Rasconi,S., Chabe,M., Niquil,N., Christaki,U., Viscogliosi,E. and Sime-ngando,T. TITLE Diversity, quantification and biogeography of fungal communities in aquatic ecosystems: 18S rDNA cloning/sequencing and pyrosequencing complementary approaches JOURNAL Unpublished REFERENCE 2 (bases 1 to 2271) AUTHORS Monchy,S., Sanciu,G., Jobard,M., Rasconi,S., Chabe,M., Niquil,N., Christaki,U., Viscogliosi,E. and Sime-ngando,T. TITLE Direct Submission JOURNAL Submitted (27-AUG-2010) Universite Blaise-Pascal, Clermont-Ferrand II, LMGE, Laboratoire Microorganismes: Genome et Environnement, 24 av. des Landais, Aubiere 63177, France FEATURES Location/Qualifiers source 1..2271 /organism="uncultured Dikarya" /mol_type="genomic DNA" /isolation_source="meromictic, dimictic and oligo-mesotrophic lake" /db_xref="taxon:754009" /clone="PA2009E3" /environmental_sample /country="France: Massif Central, Lake Pavin" /lat_lon="45.50 N 2.88 E" /PCR_primers="fwd_name: NS1, fwd_seq: gtagtcatatgcttgtctc, rev_name: ITS4, rev_seq: ttcctccgcttattgatatgc" misc_RNA 1..>2271 /note="contains 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, and 28S ribosomal RNA" BASE COUNT 583 a 525 c 592 g 571 t ORIGIN 1 aaagattaag ccatgcatgt ctaagtataa gcaattatac agcgaaactg cgaatggctc 61 attatataag ttatcgttta tttgatagta ccttactact tggataaccg tggtaattct 121 agagctaata catgctaaaa atcccgactt cgggagggat gtatttatta gattaaaaac 181 caatgccctt cggggctcac tggtgattca tgataactcc tcgaatcgca tggccttgtg 241 ccggcgatgg ttcattcaaa tttcttccct atcaactttc gatgtttggg tattggccaa 301 acatggttgc aacgggtaac ggagggttag ggctcgaccc cggagaagga gcctgagaaa 361 cggctactac atccaaggaa ggcagcaggc gcgcaaatta cccaatcccg acacggggag 421 gtagtgacaa taaatactga tacagggctc ttttgggtct tgtaattgga atgagtacaa 481 tttaaatccc ttaacgagga tcaattggag ggcaagtctg gtgccagcag ccgcggtaat 541 tccagctcca atagcgtata ttaaagttgt tgtggttaaa aagctcgtag ttgaaccttg 601 ggcctggctg gccggtccgc ctcaccgcgt gtactggtcc ggccgggcct ttccctctgt 661 ggaaccccat gcccttcact gggtgtggcg gggaaacggg acttttactg tgaaaaaatt 721 agagtgctcc aggcaggcct atgctcgaat acattagcat ggaataatag aataggacgt 781 gtggttctat tttgttggtt tctaggaccg ccgtaatgat taatagggac agtcgggggc 841 atcagtattc aattgtcaga ggtgaaattc ttggatttat tgaagactaa ctactgcgaa 901 agcatttgcc aaggatgttt tcattaatca ggaacgaaag ttaggggatc gaagacgatc 961 agataccgtc gtagtcttaa ccataaacta tgccgactag ggatcggacg gtgttatttt 1021 ttgacccgtt cggcacctta cgagaaatca aagtgcttgg gctccagggg gagtatggtc 1081 gcaaggctga aacttaaaga aattgacgga agggcaccac caggggtgga gcctgcggct 1141 taatttgact caacacgggg aaactcacca ggtccagaca caatgaggat tgacagattg 1201 agagctcttt cttgattttg tgggtggtgg tgcatggccg ttcttagttg gtggagtgat 1261 ttgtctgctt aattgcgata acgaacgaga ccttaacctg ctaaatagcc cgtattgctt 1321 tggcagtacg ctggcttctt agagggacta tcggctcaag ccgatggaag tttgaggcaa 1381 taacaggtct gtgatgccct tagatgttct gggccgcacg cgcgctacac tgacggagcc 1441 agcgagtact tccttgtccg aaaggtccgg gtaatcttgt taaactccgt cgtgctgggg 1501 atagagcatt gcaattattg ctcttcaacg aggaatccct agtaagcgca agtcatcagc 1561 ttgcgttgat tacgtccctg ccctttgtac acaccgcccg tcgctactac cgactgaatg 1621 gctcagtgag gcgtccggac tggcccagag aggtgggcaa ctaccactca gggccggaaa 1681 gctctccaaa ctcggtcatt tagaggaggt aaaagtcgta acaaggtctc cgttggtgaa 1741 ccagcggagg gatcattacc gagtttacaa ctcccaaacc cctgtgaaca taccttaatg 1801 ttgcctcggc ggatcagccc gcgccccgta aaacgggacg gcccgccaga ggacccaaac 1861 tctaatgttt cttattgtaa cttctgagta aaacaaacaa ataaatcaaa actttcaaca 1921 acggatctct tggttctggc atcgatgaag aacgcagcaa aatgcgataa gtaatgtgaa 1981 ttgcagaatt cagtgaatca tcgaatcttt gaacgcacat tgcgcccgct ggtattccgg 2041 cgggcatgcc tgttcgagcg tcatttcaac cctcaagccc ccgggtttgg tgttggggat 2101 cggctctgcc cttctgggcg gtgccgcccc cgaaatacat tggcggtctc gctgcagcct 2161 ccattgcgta gtagctaaca cctcgcaact ggaacgcggc gcggccatgc cgtaaaaccc 2221 caacttctga atgttgacct cggatcaggt aggaataccc gctgaactta a //