LOCUS HQ191288 2295 bp DNA linear ENV 13-NOV-2010 DEFINITION Uncultured Dikarya clone PA2009E4 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. ACCESSION HQ191288 VERSION HQ191288.1 KEYWORDS ENV. SOURCE uncultured Dikarya ORGANISM uncultured Dikarya Eukaryota; Fungi; Dikarya; environmental samples. REFERENCE 1 (bases 1 to 2295) AUTHORS Monchy,S., Sanciu,G., Jobard,M., Rasconi,S., Chabe,M., Niquil,N., Christaki,U., Viscogliosi,E. and Sime-ngando,T. TITLE Diversity, quantification and biogeography of fungal communities in aquatic ecosystems: 18S rDNA cloning/sequencing and pyrosequencing complementary approaches JOURNAL Unpublished REFERENCE 2 (bases 1 to 2295) AUTHORS Monchy,S., Sanciu,G., Jobard,M., Rasconi,S., Chabe,M., Niquil,N., Christaki,U., Viscogliosi,E. and Sime-ngando,T. TITLE Direct Submission JOURNAL Submitted (27-AUG-2010) Universite Blaise-Pascal, Clermont-Ferrand II, LMGE, Laboratoire Microorganismes: Genome et Environnement, 24 av. des Landais, Aubiere 63177, France FEATURES Location/Qualifiers source 1..2295 /organism="uncultured Dikarya" /mol_type="genomic DNA" /isolation_source="meromictic, dimictic and oligo-mesotrophic lake" /db_xref="taxon:754009" /clone="PA2009E4" /environmental_sample /country="France: Massif Central, Lake Pavin" /lat_lon="45.50 N 2.88 E" /PCR_primers="fwd_name: NS1, fwd_seq: gtagtcatatgcttgtctc, rev_name: ITS4, rev_seq: ttcctccgcttattgatatgc" misc_RNA 1..>2295 /note="contains 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, and 28S ribosomal RNA" BASE COUNT 568 a 526 c 614 g 587 t ORIGIN 1 aaagattaag ccatgcatgt ctaagtataa gcaatctata cggtgaaact gcgaatggct 61 cattaaatca gttatcgttt atttgatagt accttactac atggataacc gtggtaattc 121 tagagctaat acatgctaaa aaccccgact tcgggagggg tgtatttatt agataaaaaa 181 ccaatgccct tcggggctcc ttggtgattc ataataactc aacgaatcgc atggccttgc 241 gccggcgatg gttcattcaa atttctgccc tatcaacttt cgatggtagg atagtggcct 301 accgtggtat caacgggtaa cggggaatta gggttcgatt ccggagaggg agcctgagaa 361 acggctacca catccaagga aggcagcagg cgcgcaaatt acccaatccc gacacgggga 421 ggtagtgaca ataaatactg atacagggct cttttgggtc ttgtaattgg aatgagtaca 481 atttaaatcc cttaacgagg aacaattgga ggggcaagtc tggtgccagc agccgcggta 541 attccagctc caatagcgta tattaaagtt gttgcagtta aaaagctcgt agttgaacct 601 tgggcctggc tggccggtcc gcctcaccgc gtgtactggt ccggccgggc ctttccttct 661 ggggatccgc atgcccttca ctgggtgtgc cggggatcca ggacttttac tttgaaaaaa 721 ttagagtgtt caaagcaggc ctttgctcga atacattagc atggaataat agaataggac 781 gtgcgtctct attttgttgg tttctaggga cgccgtaatg attaataggg acagtcgggg 841 gcatcagtat tcaattgtca gaggtgaaat tcttggattt attgaagact aactactgcg 901 aaagcatttg ccaaggatgt tttcattaat cagtgaacga aagttagggg atcgaagacg 961 atcagatacc gtcgtagtct taaccataaa ctatgccgac tagggatcgg gcgatgttat 1021 tatcttgact cgctcggcac cttacgagaa atcaaagtct ttgggttctg gggggagtat 1081 ggtcgcaagg ctgaaactta aagaaattga cggaagggca ccaccaggcg tggagcctgc 1141 ggcttaattt gactcaacac ggggaaactc accaggtcca gacacaataa ggattgacag 1201 attgagagct ctttcttgat tttgtgggtg gtggtgcatg gccgttctta gttggtggag 1261 tgatttgtct gcttaattgc gataacgaac gagaccttaa cctgctaaat agccaggcca 1321 gctttggctg gtcgccggct tcttaggggg actatcggct caagccgatg gaagtttgag 1381 gcaataacag gtctgtgatg cccttagatg ttctgggccg cacgcgcgct acactgacag 1441 agccaacgag ttcatcacct tggccggaag gtctgggtaa tcttgttaaa ctctgtcgtg 1501 ctggggatag agcattgcaa ttattgctct tcaacgagga atgcctagta agcgcgtgtc 1561 atcagcacgc gttgattacg tccctgccct ttgtacacac cgcccgtcgc tactaccgat 1621 tgaacggctc agtgaggcct tcggactggc cccaggaggt cggcaacgac caccaggggc 1681 cggaaagttg gtcaaacttg gtcgtttaga ggaagtaaaa gtcgtaacaa ggtttccgta 1741 ggtgaacctg cggaaggatc attaccgagt accgggtcct cgcggcccgc actccaaccc 1801 tttgtgtacc aactttgttg ctttggcggg cccgcggtgt aatgccgcag ccggctcacg 1861 ccggttagcg cccgccagag aaccgttaaa ctcttgttta aacagtgtcg tctgagcaaa 1921 atcataacag ttaaaacttt caacaacgga tctcttggtt ctggcatcga tgaagaacgc 1981 agcgaaatgc gataagtaat gtgaattgca gaattcagtg aatcatcgaa tctttgaacg 2041 cacattgcgc cccctggtat tccggggggc atgcctgttc gagcgtcatt tcaaccctca 2101 agctctgctt ggtattgggc atcgcaggag cctgtctccg gcgtgcctca aagccatcgg 2161 cggtggtgcc tttctctaag cgtggtagaa tctttattcg cttctgagtt gggtctcacc 2221 cgccggataa accgggcctc gcgtccactt tctcaggttg acctcggatc aggtagggat 2281 acccgctgaa cttaa //