Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Bacteria
(39,426)

Viruses
(1,263)

Phages
(101)

Unclassified
(5,385)

All
(924,376)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(7,463)

Tiling Array
(684)

cDNA Array
(10,536)

Oligo Array
(19,784)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

muscular
(0)

liver
(0)

lung
(40)

urinary
(10)

endo/exo-crine
(123)

embryo
(18)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(23)

unclassified
(6,878)

all
(7,463)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM356406	WT at LL24, rep1	2,515	Waseda University	2008-12-29	[GeneChip] [Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0 (GPL8012)	RNA	Synechococcus elongatus PCC 7942	lung	WT at LL24, rep1
2	GSM356418	WT at LL24, rep2	2,515	Waseda University	2008-12-29	[GeneChip] [Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0 (GPL8012)	RNA	Synechococcus elongatus PCC 7942	lung	WT at LL24, rep2
3	GSM356430	kaiABC-null at LL24, rep1	2,515	Waseda University	2008-12-29	[GeneChip] [Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0 (GPL8012)	RNA	Synechococcus elongatus PCC 7942	lung	kaiABC-null at LL24, rep1
4	GSM356441	kaiABC-null at LL24, rep2	2,515	Waseda University	2008-12-29	[GeneChip] [Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0 (GPL8012)	RNA	Synechococcus elongatus PCC 7942	lung	kaiABC-null at LL24, rep2
5	GSM757767	SA_0.5_hr._in_vivo-1	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 0.5 hours after intranasel instillation, C57BL/6 mice
6	GSM757768	SA_0.5_hr._in_vivo-2	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 0.5 hours after intranasel instillation, C57BL/6 mice
7	GSM757769	SA_0.5_hr._in_vivo-3	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 0.5 hours after intranasel instillation, C57BL/6 mice
8	GSM757770	SA_0.5_hr._in_vivo-4	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 0.5 hours after intranasel instillation, C57BL/6 mice
9	GSM757771	SA_2_hr._in_vivo-1	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 2.0 hours after intranasel instillation, C57BL/6 mice
10	GSM757772	SA_2_hr._in_vivo-2	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 2.0 hours after intranasel instillation, C57BL/6 mice
11	GSM757773	SA_2_hr._in_vivo-3	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 2.0 hours after intranasel instillation, C57BL/6 mice
12	GSM757774	SA_2_hr._in_vivo-4	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 2.0 hours after intranasel instillation, C57BL/6 mice
13	GSM757775	SA_6_hr._in_vivo-1	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 6.0 hours after intranasel instillation, C57BL/6 mice
14	GSM757776	SA_6_hr._in_vivo-2	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 6.0 hours after intranasel instillation, C57BL/6 mice
15	GSM757777	SA_6_hr._in_vivo-3	7,792	Seattle Children's Research Institute	2011-07-11	[GeneChip] Saur2a custom-made Affymetrix array (GPL4047)	RNA	Staphylococcus aureus	lung	S. aureus recovered from lung lavage 6.0 hours after intranasel instillation, C57BL/6 mice
16	GSM623361	WT+ben 1	8,173	Munich University Hospital	2010-11-15	[GeneChip] [P-putidaa530009N] Helmholtz Centre for Infection Research Pseudomonas putida 8K array (GPL11207)	RNA	Pseudomonas putida KT2440	lung	WT+ben 1
17	GSM623362	WT+ben 2	8,173	Munich University Hospital	2010-11-15	[GeneChip] [P-putidaa530009N] Helmholtz Centre for Infection Research Pseudomonas putida 8K array (GPL11207)	RNA	Pseudomonas putida KT2440	lung	WT+ben 2
18	GSM623363	JD1+ben 1	8,173	Munich University Hospital	2010-11-15	[GeneChip] [P-putidaa530009N] Helmholtz Centre for Infection Research Pseudomonas putida 8K array (GPL11207)	RNA	Pseudomonas putida	lung	JD1+ben 1
19	GSM623364	JD1+ben 2	8,173	Munich University Hospital	2010-11-15	[GeneChip] [P-putidaa530009N] Helmholtz Centre for Infection Research Pseudomonas putida 8K array (GPL11207)	RNA	Pseudomonas putida	lung	JD1+ben 2
20	GSM625973	P. aeruginosa isolated from patient I1NM	5,900	Montana State University	2010-11-18	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	genomic	Pseudomonas aeruginosa	lung	P. aeruginosa clinical isolate from CF lung

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