Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,355)		   Tiling Array
(676)		   cDNA Array
(10,532)		   Oligo Array
(19,682)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(729)		   Other
(57)		   All
(39,082)		  
  brain
(3)		   blood
(111)		   connective
(15)		   reproductive
(43)		   muscular
(0)		   digestive
(196)		   liver
(0)		   lung
(36)		   urinary
(10)		   endo/exo-crine
(123)		   embryo
(18)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(23)		   unclassified
(6,777)		   all
(7,355)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1001128 Mid-exponential 17978, biological rep 1 7,727 University of Rochester 2012-09-11 [GeneChip] Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F] (GPL16041) RNA Acinetobacter baumannii
Acinetobacter baumannii		 unclassified source_name:Mid-exponential 17978 title:Mid-exponential 17978, biological rep 1 description:Gene expression data from mid-exponential phase wildtype ATCC 17978 cells
2 GSM1001129 Mid-exponential 17978, biological rep 2 7,727 University of Rochester 2012-09-11 [GeneChip] Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F] (GPL16041) RNA Acinetobacter baumannii
Acinetobacter baumannii		 unclassified source_name:Mid-exponential 17978 title:Mid-exponential 17978, biological rep 2 description:Gene expression data from mid-exponential phase wildtype ATCC 17978 cells
3 GSM1001130 Mid-exponential 17978, biological rep 3 7,727 University of Rochester 2012-09-11 [GeneChip] Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F] (GPL16041) RNA Acinetobacter baumannii
Acinetobacter baumannii		 unclassified source_name:Mid-exponential 17978 title:Mid-exponential 17978, biological rep 3 description:Gene expression data from mid-exponential phase wildtype ATCC 17978 cells
4 GSM1001131 Mid-exponential lpsB:Tn5, biological rep 1 7,727 University of Rochester 2012-09-11 [GeneChip] Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F] (GPL16041) RNA Acinetobacter baumannii
Acinetobacter baumannii		 unclassified source_name:Mid-exponential lpsB:Tn5 title:Mid-exponential lpsB:Tn5, biological rep 1 description:Gene expression data from mid-exponential ATCC 17978 cells containing lpsB:Tn5 mutation
5 GSM1001132 Mid-exponential lpsB:Tn5, biological rep 2 7,727 University of Rochester 2012-09-11 [GeneChip] Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F] (GPL16041) RNA Acinetobacter baumannii
Acinetobacter baumannii		 unclassified source_name:Mid-exponential lpsB:Tn5 title:Mid-exponential lpsB:Tn5, biological rep 2 description:Gene expression data from mid-exponential ATCC 17978 cells containing lpsB:Tn5 mutation
6 GSM1001133 Mid-exponential ∆lpsB, biological rep 1 7,727 University of Rochester 2012-09-11 [GeneChip] Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F] (GPL16041) RNA Acinetobacter baumannii
Acinetobacter baumannii		 unclassified source_name:Mid-exponential ∆lpsB title:Mid-exponential ∆lpsB, biological rep 1 description:Gene expression data from mid-exponential ATCC 17978 cells containing ∆lpsB mutation
7 GSM1001134 Mid-exponential ∆lpsB, biological rep 2 7,727 University of Rochester 2012-09-11 [GeneChip] Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F] (GPL16041) RNA Acinetobacter baumannii
Acinetobacter baumannii		 unclassified source_name:Mid-exponential ∆lpsB title:Mid-exponential ∆lpsB, biological rep 2 description:Gene expression data from mid-exponential ATCC 17978 cells containing ∆lpsB mutation
8 GSM1001135 Mid-exponential ∆lpsB, biological rep 3 7,727 University of Rochester 2012-09-11 [GeneChip] Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F] (GPL16041) RNA Acinetobacter baumannii
Acinetobacter baumannii		 unclassified source_name:Mid-exponential ∆lpsB title:Mid-exponential ∆lpsB, biological rep 3 description:Gene expression data from mid-exponential ATCC 17978 cells containing ∆lpsB mutation
9 GSM181342 Vibrio fischeri cells grown to an OD600 of 0.3 with no exogenous 3OC6-HSL added #1 4,049 The University of British Columbia 2007-04-09 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:Symbiotic bacterium Vibrio fischeri title:Vibrio fischeri cells grown to an OD600 of 0.3 with no exogenous 3OC6-HSL added #1 description:A high-density oligonucleotide microarray (Affymetrix GeneChip) was custom designed and manufactured by Affymetrix based on the sequences of ORFs and intergenic regions. cDNA synthesis, fragmentation, labeling, hybridization, and processing of custom designed Vibrio fischeri GeneChips were carried out as recommended by the manufacturer. Experiments were performed in duplicate with independently prepared samples.
10 GSM181344 Vibrio fischeri cells grown to an OD600 of 0.3 with no exogenous 3OC6-HSL added #2 4,049 The University of British Columbia 2007-04-09 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:Symbiotic bacterium Vibrio fischeri title:Vibrio fischeri cells grown to an OD600 of 0.3 with no exogenous 3OC6-HSL added #2 description:A high-density oligonucleotide microarray (Affymetrix GeneChip) was custom designed and manufactured by Affymetrix based on the sequences of ORFs and intergenic regions. cDNA synthesis, fragmentation, labeling, hybridization, and processing of custom designed Vibrio fischeri GeneChips were carried out as recommended by the manufacturer. Experiments were performed in duplicate with independently prepared samples.
11 GSM181346 Vibrio fischeri cells grown to an OD600 of 0.3 with exogenous 3OC6-HSL added #1 4,049 The University of British Columbia 2007-04-09 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:Symbiotic bacterium Vibrio fischeri title:Vibrio fischeri cells grown to an OD600 of 0.3 with exogenous 3OC6-HSL added #1 description:A high-density oligonucleotide microarray (Affymetrix GeneChip) was custom designed and manufactured by Affymetrix based on the sequences of ORFs and intergenic regions. cDNA synthesis, fragmentation, labeling, hybridization, and processing of custom designed Vibrio fischeri GeneChips were carried out as recommended by the manufacturer. Experiments were performed in duplicate with independently prepared samples.
12 GSM181348 Vibrio fischeri cells grown to an OD600 of 0.3 with exogenous 3OC6-HSL added #2 4,049 The University of British Columbia 2007-04-09 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:Symbiotic bacterium Vibrio fischeri title:Vibrio fischeri cells grown to an OD600 of 0.3 with exogenous 3OC6-HSL added #2 description:A high-density oligonucleotide microarray (Affymetrix GeneChip) was custom designed and manufactured by Affymetrix based on the sequences of ORFs and intergenic regions. cDNA synthesis, fragmentation, labeling, hybridization, and processing of custom designed Vibrio fischeri GeneChips were carried out as recommended by the manufacturer. Experiments were performed in duplicate with independently prepared samples.
13 GSM181349 Vibrio fischeri cells grown to an OD600 of 1.5 with no exogenous 3OC6-HSL added #1 4,049 The University of British Columbia 2007-04-09 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:Symbiotic bacterium Vibrio fischeri title:Vibrio fischeri cells grown to an OD600 of 1.5 with no exogenous 3OC6-HSL added #1 description:A high-density oligonucleotide microarray (Affymetrix GeneChip) was custom designed and manufactured by Affymetrix based on the sequences of ORFs and intergenic regions. cDNA synthesis, fragmentation, labeling, hybridization, and processing of custom designed Vibrio fischeri GeneChips were carried out as recommended by the manufacturer. Experiments were performed in duplicate with independently prepared samples.
14 GSM181351 Vibrio fischeri cells grown to an OD600 of 1.5 with no exogenous 3OC6-HSL added #2 4,049 The University of British Columbia 2007-04-09 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:Symbiotic bacterium Vibrio fischeri title:Vibrio fischeri cells grown to an OD600 of 1.5 with no exogenous 3OC6-HSL added #2 description:A high-density oligonucleotide microarray (Affymetrix GeneChip) was custom designed and manufactured by Affymetrix based on the sequences of ORFs and intergenic regions. cDNA synthesis, fragmentation, labeling, hybridization, and processing of custom designed Vibrio fischeri GeneChips were carried out as recommended by the manufacturer. Experiments were performed in duplicate with independently prepared samples.
15 GSM181353 Vibrio fischeri cells grown to an OD600 of 1.5 with exogenous 3OC6-HSL added #1 4,049 The University of British Columbia 2007-04-09 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:Symbiotic bacterium Vibrio fischeri title:Vibrio fischeri cells grown to an OD600 of 1.5 with exogenous 3OC6-HSL added #1 description:A high-density oligonucleotide microarray (Affymetrix GeneChip) was custom designed and manufactured by Affymetrix based on the sequences of ORFs and intergenic regions. cDNA synthesis, fragmentation, labeling, hybridization, and processing of custom designed Vibrio fischeri GeneChips were carried out as recommended by the manufacturer. Experiments were performed in duplicate with independently prepared samples.
16 GSM181355 Vibrio fischeri cells grown to an OD600 of 1.5 with exogenous 3OC6-HSL added #2 4,049 The University of British Columbia 2007-04-09 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:Symbiotic bacterium Vibrio fischeri title:Vibrio fischeri cells grown to an OD600 of 1.5 with exogenous 3OC6-HSL added #2 description:A high-density oligonucleotide microarray (Affymetrix GeneChip) was custom designed and manufactured by Affymetrix based on the sequences of ORFs and intergenic regions. cDNA synthesis, fragmentation, labeling, hybridization, and processing of custom designed Vibrio fischeri GeneChips were carried out as recommended by the manufacturer. Experiments were performed in duplicate with independently prepared samples.
17 GSM388892 wild-type rep1 4,046 University of Wisconsin-Madison 2009-04-02 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:wild-type, untreated title:wild-type rep1 description:expression data from untreated wid-type
18 GSM388893 wild-type rep2 4,046 University of Wisconsin-Madison 2009-04-02 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:wild-type, untreated title:wild-type rep2 description:experssion data from untreated wild-type
19 GSM388894 wild-type rep3 4,046 University of Wisconsin-Madison 2009-04-02 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:wild-type, untreated title:wild-type rep3 description:experssion data from untreated wild-type
20 GSM388895 wild-type +NO rep1 4,046 University of Wisconsin-Madison 2009-04-02 [GeneChip] Custom Vibrio fischeri GeneChip Array (Affymetrix) (GPL5074) RNA Aliivibrio fischeri
Aliivibrio fischeri		 unclassified source_name:wild-type, treated with NO title:wild-type +NO rep1 description:expression data from wild-type treated with 80uM NO generator for 30 min
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