Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(87)		   Tiling Array
(49)		   cDNA Array
(284)		   Oligo Array
(1,073)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(3)		   HT-Seq
(129)		   Other
(11)		   All
(1,636)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL15867 Agilent-027432 Syn6803_expressions454_4-3probes 45,220 University of Freiburg 2012-07-30 Agilent Technologies Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803		 HT Sequencing in situ oligonucleotide, Agilent-027432 Syn6803_expressions454_4-3probes, 4 probes per feature on chr except for internals; otherwise 3 probes per feature; done on 454 data with new annotation Arrays of this design have barcodes that begin with 16027432 or 2527432. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
2 GPL10328 Illumina Genome Analyzer II (Escherichia coli) 0 2010-04-14 Escherichia coli
Escherichia coli		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Escherichia coli),
3 GPL10433 Illumina Genome Analyzer II (Bryantella formatexigens DSM 14469) 0 2010-05-19 Marvinbryantia formatexigens DSM 14469
Marvinbryantia formatexigens DSM 14469		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Bryantella formatexigens DSM 14469),
4 GPL10434 Illumina Genome Analyzer II (Bacteroides thetaiotaomicron VPI-5482) 0 2010-05-19 Bacteroides thetaiotaomicron VPI-5482
Bacteroides thetaiotaomicron VPI-5482		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Bacteroides thetaiotaomicron VPI-5482),
5 GPL10435 Illumina Genome Analyzer II (Bacteroides thetaiotaomicron VPI-5482; Blautia hydrogenotrophica DSM 10507) 0 2010-05-19 Bacteroides thetaiotaomicron VPI-5482,Blautia hydrogenotrophica DSM 10507
Bacteroides thetaiotaomicron VPI-5482,Blautia hydrogenotrophica DSM 10507		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Bacteroides thetaiotaomicron VPI-5482; Blautia hydrogenotrophica DSM 10507),
6 GPL10436 Illumina Genome Analyzer II (Blautia hydrogenotrophica DSM 10507) 0 2010-05-19 Blautia hydrogenotrophica DSM 10507
Blautia hydrogenotrophica DSM 10507		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Blautia hydrogenotrophica DSM 10507),
7 GPL10437 Illumina Genome Analyzer II (Bacteroides thetaiotaomicron VPI-5482; Bryantella formatexigens DSM 14469) 0 2010-05-19 Bacteroides thetaiotaomicron VPI-5482,Marvinbryantia formatexigens DSM 14469
Bacteroides thetaiotaomicron VPI-5482,Marvinbryantia formatexigens DSM 14469		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Bacteroides thetaiotaomicron VPI-5482; Bryantella formatexigens DSM 14469),
8 GPL10438 Illumina Genome Analyzer II (Escherichia coli str. K-12 substr. MG1655) 0 2010-05-19 Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Escherichia coli str. K-12 substr. MG1655),
9 GPL10638 Illumina Genome Analyzer II (Geobacter sulfurreducens PCA) 0 2010-06-30 Geobacter sulfurreducens PCA
Geobacter sulfurreducens PCA		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Geobacter sulfurreducens PCA),
10 GPL10934 Illumina Genome Analyzer II (Pseudomonas putida KT2440) 0 2010-09-16 Pseudomonas putida KT2440
Pseudomonas putida KT2440		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Pseudomonas putida KT2440),
11 GPL10997 Illumina genome analyzer II (Salmonella enterica subsp. enterica serovar Typhimurium) 0 2010-09-29 Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium		 HT Sequencing high-throughput sequencing, Illumina genome analyzer II (Salmonella enterica subsp. enterica serovar Typhimurium),
12 GPL10998 Illumina Genome Analyzer II (Salmonella enterica subsp. enterica serovar Typhimurium) 0 2010-09-29 Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Salmonella enterica subsp. enterica serovar Typhimurium),
13 GPL11140 454 GS (Chlamydophila pneumoniae CWL029) 0 2010-10-28 Chlamydophila pneumoniae CWL029
Chlamydophila pneumoniae CWL029		 HT Sequencing high-throughput sequencing, 454 GS (Chlamydophila pneumoniae CWL029),
14 GPL11215 Illumina Genome Analyzer II (Methanobrevibacter smithii ATCC 35061) 0 2010-11-16 Methanobrevibacter smithii ATCC 35061
Methanobrevibacter smithii ATCC 35061		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Methanobrevibacter smithii ATCC 35061),
15 GPL11216 Illumina Genome Analyzer II (Methanobrevibacter smithii) 0 2010-11-16 Methanobrevibacter smithii
Methanobrevibacter smithii		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Methanobrevibacter smithii),
16 GPL11385 AB SOLiD System 3.0 (Neisseria gonorrhoeae F62) 0 2011-01-05 Neisseria gonorrhoeae F62
Neisseria gonorrhoeae F62		 HT Sequencing high-throughput sequencing, AB SOLiD System 3.0 (Neisseria gonorrhoeae F62),
17 GPL11485 Illumina Genome Analyzer IIx (Nostoc sp. PCC 7120) 0 2011-01-14 Nostoc sp. PCC 7120
Nostoc sp. PCC 7120		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Nostoc sp. PCC 7120),
18 GPL11535 Illumina Genome Analyzer II (Bacteria) 0 2011-01-18 Bacteria
Bacteria		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Bacteria),
19 GPL11645 Illumina Genome Analyzer II (Nostoc sp. PCC 7120) 0 2011-01-24 Nostoc sp. PCC 7120
Nostoc sp. PCC 7120		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Nostoc sp. PCC 7120),
20 GPL13148 Illumina Genome Analyzer Iix (Klebsiella pneumoniae) 0 2011-02-09 Klebsiella pneumoniae
Klebsiella pneumoniae		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer Iix (Klebsiella pneumoniae),
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