Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(630)		   Tiling Array
(81)		   cDNA Array
(676)		   Oligo Array
(1,413)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(5)		   HT-Seq
(104)		   Other
(11)		   All
(2,920)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 RNAseq analysis of the serotype M1 group A Streptococcus strain MGAS2221 (GSE45325) [HT Sequencing] Illumina Genome Analyzer IIx (Streptococcus pyogenes) (GPL16845) Methodist Hospital 2013-03-19 Streptococcus pyogenes
Streptococcus pyogenes		 4
(0 x 4) 		4 by_platform
by_series
2 Global transcriptional and phenotypic analyseis of Escherichia coli O157:H7 strain Xuzhou21 and its pO157_Sal cured mutant (GSE44846) [HT Sequencing] Illumina HiSeq 2000 (Escherichia coli O157:H7) (GPL16748) china cdc 2013-03-04 Escherichia coli O157:H7
Escherichia coli O157:H7		 4
(0 x 4) 		4 by_platform
by_series
3 A global differential transcriptomic profiling of Mycobacterium gilvum PYR-GCK during pyrene and glucose metabolism, using RNA seq. (GSE44536) [HT Sequencing] Illumina HiSeq 2000 (Mycobacterium gilvum PYR-GCK) (GPL16708) Hanyang University 2013-02-21 Mycobacterium gilvum PYR-GCK
Mycobacterium gilvum PYR-GCK		 2
(0 x 2) 		2 by_platform
by_series
4 Acinetobacter oleivorans DR1 : WT stationary phase vs. aqsR mutant stationary phase (GSE44347) [HT Sequencing] Illumina Genome Analyzer IIx (Acinetobacter oleivorans DR1) (GPL16687) Korea university 2013-02-15 Acinetobacter sp. DR1
Acinetobacter sp. DR1		 2
(0 x 2) 		2 by_platform
by_series
5 The Intracellular Life of Mycobacterium avium subsp. paratuberculosis During Macrophage Stress: A Key Role for the Alternative Sigma Factor, SigH (GSE43182) [HT Sequencing] Illumina HiSeq 2000 (Mycobacterium avium subsp. paratuberculosis K-10) (GPL16429) UW-Madison 2012-12-28 Mycobacterium avium subsp. paratuberculosis K-10
Mycobacterium avium subsp. paratuberculosis K-10		 4
(0 x 4) 		4 by_platform
by_series
6 Rho and NusG suppress pervasive antisense transcription in Escherichia coli [RNA-seq]. (GSE41939) [HT Sequencing] Illumina Genome Analyzer IIx (Escherichia coli K-12) (GPL16227) UW-Madison 2012-10-31 Escherichia coli K-12
Escherichia coli K-12		 4
(0 x 4) 		4 by_platform
by_series
7 Rho and NusG suppress pervasive antisense transcription in Escherichia coli (GSE41940) [HT Sequencing] Illumina Genome Analyzer IIx (Escherichia coli K-12) (GPL16227) UW-Madison 2012-10-31 Escherichia coli K-12
Escherichia coli K-12		 4
(0 x 4) 		4 by_platform
by_series
8 The small RNA PsrR1 affects oligomerization of photosystem I by post-transcriptional repression of psaL in Synechocystis sp. PCC6803 (GSE41411) [HT Sequencing] Agilent-027432 Syn6803_expressions454_4-3probes (GPL15867) University of Freiburg 2012-10-09 Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803		 452,200
(45,220 x 10) 		10 by_platform
by_series
9 Adaptive evolution of Corynebacterium glutamicum resistant to oxidative stress and its global gene expression profiling (GSE41232) [HT Sequencing] Illumina Genome Analyzer II (Corynebacterium glutamicum ATCC 13032) (GPL16168) The Catholic University of Korea 2012-09-30 Corynebacterium glutamicum ATCC 13032
Corynebacterium glutamicum ATCC 13032		 3
(0 x 3) 		3 by_platform
by_series
10 CpG underrepresentation and the new bacterial CpG specific DNA methyltransferase M.MpeI (GSE41022) [HT Sequencing] Illumina MiSeq (Escherichia coli) (GPL16085) International Institute of Molecular and Cell Biology 2012-09-20 Escherichia coli
Escherichia coli		 2
(0 x 2) 		2 by_platform
by_series
11 CpG underrepresentation and the new bacterial CpG specific DNA methyltransferase M.MpeI (GSE41022) [HT Sequencing] Illumina MiSeq (Mycoplasma penetrans) (GPL16084) International Institute of Molecular and Cell Biology 2012-09-20 Mycoplasma penetrans
Mycoplasma penetrans		 1
(0 x 1) 		1 by_platform
by_series
12 High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis (GSE40862) [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) EPFL 2012-09-13 Mycobacterium tuberculosis
Mycobacterium tuberculosis		 13
(0 x 13) 		13 by_platform
by_series
13 High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis (ChIP-seq) (GSE40845) [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) EPFL 2012-09-12 Mycobacterium tuberculosis
Mycobacterium tuberculosis		 10
(0 x 10) 		10 by_platform
by_series
14 High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis (RNA-seq) (GSE40846) [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) EPFL 2012-09-12 Mycobacterium tuberculosis
Mycobacterium tuberculosis		 3
(0 x 3) 		3 by_platform
by_series
15 Metabolic regulation of ‘Ca. Methylacidiphilum fumariolicum’ SolV cells grown under different nitrogen and oxygen limitations (GSE40528) [HT Sequencing] Illumina Genome Analyzer II (Methylacidiphilum fumariolicum) (GPL16013) Radboud University Nijmegen 2012-08-31 Methylacidiphilum fumariolicum
Methylacidiphilum fumariolicum		 3
(0 x 3) 		3 by_platform
by_series
16 Genomic analysis of the combined effects of H-NS and co-regulators on E. coli gene expression (GSE40313) [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) EMBL-EBI 2012-08-23 Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 16
(0 x 16) 		14 2 by_platform
by_series
17 The Methylomes of Six Bacteria (GSE40133) [HT Sequencing] PacBio RS (Campylobacter jejuni) (GPL15938) Pacific Biosciences 2012-08-15 Campylobacter jejuni
Campylobacter jejuni		 2
(0 x 2) 		2 by_platform
by_series
18 The Methylomes of Six Bacteria (GSE40133) [HT Sequencing] PacBio RS (Geobacter metallireducens) (GPL15935) Pacific Biosciences 2012-08-15 Geobacter metallireducens
Geobacter metallireducens		 1
(0 x 1) 		1 by_platform
by_series
19 The Methylomes of Six Bacteria (GSE40133) [HT Sequencing] PacBio RS (Chromohalobacter salexigens) (GPL15936) Pacific Biosciences 2012-08-15 Chromohalobacter salexigens
Chromohalobacter salexigens		 1
(0 x 1) 		1 by_platform
by_series
20 The Methylomes of Six Bacteria (GSE40133) [HT Sequencing] PacBio RS (Vibrio breoganii) (GPL15937) Pacific Biosciences 2012-08-15 Vibrio breoganii
Vibrio breoganii		 1
(0 x 1) 		1 by_platform
by_series
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