Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(98)
  Tiling Array
(59)
  cDNA Array
(290)
  Oligo Array
(1,179)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(3)
  HT-Seq
(250)
  Other
(22)
  All
(1,901)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL18322 Illumina HiSeq 2000 (Yersinia pseudotuberculosis YPIII) 0 2014-02-24 Yersinia pseudotuberculosis YPIII
Yersinia pseudotuberculosis YPIII
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Yersinia pseudotuberculosis YPIII),
2 GPL16821 Illumina Genome Analyzer II (Xenorhabdus nematophila) 0 2013-03-19 Xenorhabdus nematophila
Xenorhabdus nematophila
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Xenorhabdus nematophila),
3 GPL17200 Illumina HiSeq 2000 (Xenorhabdus nematophila) 0 2013-05-24 Xenorhabdus nematophila
Xenorhabdus nematophila
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Xenorhabdus nematophila),
4 GPL16609 Illumina HiSeq 2000 (Xanthomonas oryzae pv. oryzae) 0 2013-02-11 Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Xanthomonas oryzae pv. oryzae),
5 GPL16170 Illumina Genome Analyzer II (Xanthomonas citri subsp. citri) 0 2012-10-11 Xanthomonas citri subsp. citri
Xanthomonas citri subsp. citri
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Xanthomonas citri subsp. citri),
6 GPL17794 Illumina MiSeq (Vibrio parahaemolyticus) 0 2013-10-18 Vibrio parahaemolyticus
Vibrio parahaemolyticus
HT Sequencing high-throughput sequencing, Illumina MiSeq (Vibrio parahaemolyticus),
7 GPL18111 Illumina Genome Analyzer IIx (Vibrio parahaemolyticus) 0 2013-12-24 Vibrio parahaemolyticus
Vibrio parahaemolyticus
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Vibrio parahaemolyticus),
8 GPL15937 PacBio RS (Vibrio breoganii) 0 2012-08-15 Vibrio breoganii
Vibrio breoganii
HT Sequencing high-throughput sequencing, PacBio RS (Vibrio breoganii),
9 GPL17995 Illumina Genome Analyzer (Thermus thermophilus HB27) 0 2013-11-26 Thermus thermophilus HB27
Thermus thermophilus HB27
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Thermus thermophilus HB27),
10 GPL14992 Illumina Genome Analyzer IIx (Thermus thermophilus) 0 2011-12-09 Thermus thermophilus
Thermus thermophilus
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Thermus thermophilus),
11 GPL14993 Illumina HiSeq 2000 (Thermus thermophilus) 0 2011-12-09 Thermus thermophilus
Thermus thermophilus
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Thermus thermophilus),
12 GPL15474 Illumina Genome Analyzer IIx (Thermotoga maritima MSB8) 0 2012-04-20 Thermotoga maritima MSB8
Thermotoga maritima MSB8
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Thermotoga maritima MSB8),
13 GPL18473 Illumina HiSeq 2000 (Thermococcus kodakarensis KOD1) 0 2014-03-26 Thermococcus kodakarensis KOD1
Thermococcus kodakarensis KOD1
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Thermococcus kodakarensis KOD1),
14 GPL15867 Agilent-027432 Syn6803_expressions454_4-3probes 45,220 University of Freiburg 2012-07-30 Agilent Technologies Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803
HT Sequencing in situ oligonucleotide, Agilent-027432 Syn6803_expressions454_4-3probes, 4 probes per feature on chr except for internals; otherwise 3 probes per feature; done on 454 data with new annotation Arrays of this design have barcodes that begin with 16027432 or 2527432. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
15 GPL17697 Illumina MiSeq (Synechocystis sp. PCC 6803) 0 2013-09-08 Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803
HT Sequencing high-throughput sequencing, Illumina MiSeq (Synechocystis sp. PCC 6803),
16 GPL17466 Illumina HiSeq 2000 (Synechococcus sp. PCC 7002) 0 2013-07-17 Synechococcus sp. PCC 7002
Synechococcus sp. PCC 7002
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Synechococcus sp. PCC 7002),
17 GPL18074 AB 5500xl Genetic Analyzer (Synechococcus sp. PCC 7002) 0 2013-12-16 Synechococcus sp. PCC 7002
Synechococcus sp. PCC 7002
HT Sequencing high-throughput sequencing, AB 5500xl Genetic Analyzer (Synechococcus sp. PCC 7002),
18 GPL13529 Illumina Genome Analyzer (Synechococcus elongatus PCC 7942) 0 2011-05-12 Synechococcus elongatus PCC 7942
Synechococcus elongatus PCC 7942
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Synechococcus elongatus PCC 7942),
19 GPL13530 Illumina Genome Analyzer II (Synechococcus elongatus PCC 7942) 0 2011-05-12 Synechococcus elongatus PCC 7942
Synechococcus elongatus PCC 7942
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Synechococcus elongatus PCC 7942),
20 GPL16957 Illumina HiSeq 2000 (Synechococcus elongatus PCC 7942) 0 2013-04-04 Synechococcus elongatus PCC 7942
Synechococcus elongatus PCC 7942
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Synechococcus elongatus PCC 7942),
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