Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(8,349)
  Tiling Array
(1,464)
  cDNA Array
(10,807)
  Oligo Array
(21,920)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(51)
  HT-Seq
(2,336)
  Other
(164)
  All
(45,091)
 
  brain
(90)
  blood
(355)
  connective
(131)
  reproductive
(78)
  muscular
(90)
  digestive
(223)
  liver
(65)
  lung
(199)
  urinary
(5)
  endo/exo-crine
(69)
  embryo
(20)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(143)
  unclassified
(20,452)
  all
(21,920)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1363757 Lmono5923_4h_TSB_rep1 14,230 University of Alberta 2014-04-07 [Oligo Array] NimbleGen Listeria monocytogenes 3K (GPL18538) RNA Listeria monocytogenes 08-5923
Listeria monocytogenes 08-5923
unclassified source_name:L. monocytogenes 08-5923 untreated title:Lmono5923_4h_TSB_rep1
2 GSM1363758 Lmono5923_4h_cclA_rep1 14,230 University of Alberta 2014-04-07 [Oligo Array] NimbleGen Listeria monocytogenes 3K (GPL18538) RNA Listeria monocytogenes 08-5923
Listeria monocytogenes 08-5923
unclassified source_name:L. monocytogenes 08-5923 treated title:Lmono5923_4h_cclA_rep1
3 GSM1363759 Lmono5923_4h_TSB_rep2 14,230 University of Alberta 2014-04-07 [Oligo Array] NimbleGen Listeria monocytogenes 3K (GPL18538) RNA Listeria monocytogenes 08-5923
Listeria monocytogenes 08-5923
unclassified source_name:L. monocytogenes 08-5923 untreated title:Lmono5923_4h_TSB_rep2
4 GSM1363760 Lmono5923_4h_cclA_rep2 14,230 University of Alberta 2014-04-07 [Oligo Array] NimbleGen Listeria monocytogenes 3K (GPL18538) RNA Listeria monocytogenes 08-5923
Listeria monocytogenes 08-5923
unclassified source_name:L. monocytogenes 08-5923 treated title:Lmono5923_4h_cclA_rep2
5 GSM1363761 Lmono5923_4h_TSB_rep3 14,230 University of Alberta 2014-04-07 [Oligo Array] NimbleGen Listeria monocytogenes 3K (GPL18538) RNA Listeria monocytogenes 08-5923
Listeria monocytogenes 08-5923
unclassified source_name:L. monocytogenes 08-5923 untreated title:Lmono5923_4h_TSB_rep3
6 GSM1363762 Lmono5923_4h_cclA_rep3 14,230 University of Alberta 2014-04-07 [Oligo Array] NimbleGen Listeria monocytogenes 3K (GPL18538) RNA Listeria monocytogenes 08-5923
Listeria monocytogenes 08-5923
unclassified source_name:L. monocytogenes 08-5923 treated title:Lmono5923_4h_cclA_rep3
7 GSM1360157 Vibrio cholerae rep1 11,335 Oregon State University 2014-03-31 [Oligo Array] Nimblegen 090128 Vibrio cholerae Gene Expression Array (GPL18506) RNA Vibrio cholerae
Vibrio cholerae
unclassified source_name:Vibrio cholerae O395N1 title:Vibrio cholerae rep1 description:This sample is of wild-type Vibrio cholerae O395N1. It is the first of two wild-type biological replicates used in this experiment, each from separate cultures.
8 GSM1360158 Vibrio cholerae rep2 11,335 Oregon State University 2014-03-31 [Oligo Array] Nimblegen 090128 Vibrio cholerae Gene Expression Array (GPL18506) RNA Vibrio cholerae
Vibrio cholerae
unclassified source_name:Vibrio cholerae O395N1 title:Vibrio cholerae rep2 description:This sample is of wild-type Vibrio cholerae O395N1. It is the second of two wild-type biological replicates used in this experiment, each from separate cultures.
9 GSM1360159 Vibrio cholerae nqr rep2 11,335 Oregon State University 2014-03-31 [Oligo Array] Nimblegen 090128 Vibrio cholerae Gene Expression Array (GPL18506) RNA Vibrio cholerae
Vibrio cholerae
unclassified source_name:Vibrio cholerae O395N1 dellta-nqrA-F title:Vibrio cholerae nqr rep2 description:This sample is of Vibrio cholerae O395N1 delta-nqrA-F mutant.
10 GSM1349756 Saureus_LAC_Vehicle_1 4,367 University of New Mexico 2014-03-18 [Oligo Array] NimbleGen Staphylococcus aureus IRN 4000005890 (NimbleGen Design Name) (GPL18434) RNA Staphylococcus aureus subsp. aureus USA300
Staphylococcus aureus subsp. aureus USA300
unclassified source_name:Staphylococcus aureus USA300 LAC with vehicle title:Saureus_LAC_Vehicle_1 description:This sample is Staphylococcus aureus USA300 LAC grown to log phase in the presence of vehicle control. This is the first of three samples.
11 GSM1349757 Saureus_LAC_Vehicle_2 4,367 University of New Mexico 2014-03-18 [Oligo Array] NimbleGen Staphylococcus aureus IRN 4000005890 (NimbleGen Design Name) (GPL18434) RNA Staphylococcus aureus subsp. aureus USA300
Staphylococcus aureus subsp. aureus USA300
unclassified source_name:Staphylococcus aureus USA300 LAC with vehicle title:Saureus_LAC_Vehicle_2 description:This sample is Staphylococcus aureus USA300 LAC grown to log phase in the presence of vehicle control. This is the second of three samples.
12 GSM1349758 Saureus_LAC_Vehicle_3 4,367 University of New Mexico 2014-03-18 [Oligo Array] NimbleGen Staphylococcus aureus IRN 4000005890 (NimbleGen Design Name) (GPL18434) RNA Staphylococcus aureus subsp. aureus USA300
Staphylococcus aureus subsp. aureus USA300
unclassified source_name:Staphylococcus aureus USA300 LAC with vehicle title:Saureus_LAC_Vehicle_3 description:This sample is Staphylococcus aureus USA300 LAC grown to log phase in the presence of vehicle control. This is the third of three samples.
13 GSM1349759 Saureus_LAC_BBM_1 4,367 University of New Mexico 2014-03-18 [Oligo Array] NimbleGen Staphylococcus aureus IRN 4000005890 (NimbleGen Design Name) (GPL18434) RNA Staphylococcus aureus subsp. aureus USA300
Staphylococcus aureus subsp. aureus USA300
unclassified source_name:Staphylococcus aureus USA300 LAC with benzbromarone title:Saureus_LAC_BBM_1 description:This sample is Staphylococcus aureus USA300 LAC grown to log phase in the presence of benzbromarone. This is the first of three samples.
14 GSM1349760 Saureus_LAC_BBM_2 4,367 University of New Mexico 2014-03-18 [Oligo Array] NimbleGen Staphylococcus aureus IRN 4000005890 (NimbleGen Design Name) (GPL18434) RNA Staphylococcus aureus subsp. aureus USA300
Staphylococcus aureus subsp. aureus USA300
unclassified source_name:Staphylococcus aureus USA300 LAC with benzbromarone title:Saureus_LAC_BBM_2 description:This sample is Staphylococcus aureus USA300 LAC grown to log phase in the presence of benzbromarone. This is the second of three samples.
15 GSM1349761 Saureus_LAC_BBM_3 4,367 University of New Mexico 2014-03-18 [Oligo Array] NimbleGen Staphylococcus aureus IRN 4000005890 (NimbleGen Design Name) (GPL18434) RNA Staphylococcus aureus subsp. aureus USA300
Staphylococcus aureus subsp. aureus USA300
unclassified source_name:Staphylococcus aureus USA300 LAC with benzbromarone title:Saureus_LAC_BBM_3 description:This sample is Staphylococcus aureus USA300 LAC grown to log phase in the presence of benzbromarone. This is the third of three samples.
16 GSM1342270 M145-36 h 14,969 Shanghai Institutes for Biological Sciences 2014-03-09 [Oligo Array] Agilent-020912 Streptomyces coelicolor 15K (GPL11371) RNA Streptomyces coelicolor
Streptomyces coelicolor
unclassified source_name:M145 after growth on MM supplemented with 75 mM Gln for 36 h title:M145-36 h description:252091210002 1-3
17 GSM1342271 M145-48 h 14,969 Shanghai Institutes for Biological Sciences 2014-03-09 [Oligo Array] Agilent-020912 Streptomyces coelicolor 15K (GPL11371) RNA Streptomyces coelicolor
Streptomyces coelicolor
unclassified source_name:M145 after growth on MM supplemented with 75 mM Gln for 48 h title:M145-48 h description:252091210002 1-4
18 GSM1342272 M145-60 h 14,969 Shanghai Institutes for Biological Sciences 2014-03-09 [Oligo Array] Agilent-020912 Streptomyces coelicolor 15K (GPL11371) RNA Streptomyces coelicolor
Streptomyces coelicolor
unclassified source_name:M145 after growth on MM supplemented with 75 mM Gln for 60 h title:M145-60 h description:252091210002 2-1
19 GSM1342273 ΔdraR-K mutant-36 h 14,969 Shanghai Institutes for Biological Sciences 2014-03-09 [Oligo Array] Agilent-020912 Streptomyces coelicolor 15K (GPL11371) RNA Streptomyces coelicolor
Streptomyces coelicolor
unclassified source_name:ΔdraR-K mutant after growth on MM supplemented with 75 mM Gln for 36 h title:ΔdraR-K mutant-36 h description:252091210002 2-2
20 GSM1342274 ΔdraR-K mutant-48 h 14,969 Shanghai Institutes for Biological Sciences 2014-03-09 [Oligo Array] Agilent-020912 Streptomyces coelicolor 15K (GPL11371) RNA Streptomyces coelicolor
Streptomyces coelicolor
unclassified source_name:ΔdraR-K mutant after growth on MM supplemented with 75 mM Gln for 48 h title:ΔdraR-K mutant-48 h description:252091210002 2-3
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