Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(516,316)		   Primates
(5,042)		   Rodents
(188,439)		   Mammals
(16,727)		   Vertebrates
(18,617)		   Invertebrates
(38,231)		   Plants
(93,098)		   Bacteria
(39,426)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,385)		   All
(924,376)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,463)		   Tiling Array
(684)		   cDNA Array
(10,536)		   Oligo Array
(19,784)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(851)		   Other
(57)		   All
(39,426)		  
  brain
(89)		   blood
(303)		   connective
(123)		   reproductive
(41)		   muscular
(90)		   digestive
(193)		   liver
(64)		   lung
(199)		   urinary
(5)		   endo/exo-crine
(63)		   embryo
(4)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(59)		   unclassified
(18,551)		   all
(19,784)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM556409 wt_static_culture_30_degrees 3,996 Beppu university 2010-06-15 [Oligo Array] NimbleGen_Zymomonas mobilis ZM4_4x72K array (GPL10545) RNA Zymomonas mobilis subsp. mobilis ATCC 29191
Zymomonas mobilis subsp. mobilis ATCC 29191		 unclassified source_name:Zymomonas mobilis ZM6 wild-type cultivated under non-aerobic conditions title:wt_static_culture_30_degrees description:This sample is of the wild-type strain of Zymomonas mobilis ZM6. The gene expressions under a static culture at 30ºC were analyzed. wt-stat 37471202 SOM047NR
2 GSM556410 wt_shaking_culture_30_degrees 3,996 Beppu university 2010-06-15 [Oligo Array] NimbleGen_Zymomonas mobilis ZM4_4x72K array (GPL10545) RNA Zymomonas mobilis subsp. mobilis ATCC 29191
Zymomonas mobilis subsp. mobilis ATCC 29191		 unclassified source_name:Zymomonas mobilis ZM6 wild-type cultivated under aerobic conditions title:wt_shaking_culture_30_degrees description:This sample is of the wild-type strain of Zymomonas mobilis ZM6. The gene expressions under a shaking culture at 30ºC were analyzed. wt-shak 37471402 SOM047NS
3 GSM556411 RDM4_shaking_culture_30_degrees 3,996 Beppu university 2010-06-15 [Oligo Array] NimbleGen_Zymomonas mobilis ZM4_4x72K array (GPL10545) RNA Zymomonas mobilis subsp. mobilis ATCC 29191
Zymomonas mobilis subsp. mobilis ATCC 29191		 unclassified source_name:Zymomonas mobilis ZM6 RDM-4 strain cultivated under aerobic conditions title:RDM4_shaking_culture_30_degrees description:This sample is of the RDM-4 strain of Zymomonas mobilis ZM6. Several RDM strains were isolated from the antibiotics-resistant mutants. The RDM-4 strain showed the most deficient respiration ability, grew well at 39ºC and produced ethanol well both in non-aerobic and aerobic conditions even at 39ºC. The gene expressions under a shaking culture at 30ºC were analyzed. RDM4_shak 37471502 SOM047NV
4 GSM556412 RDM4_static_culture_38_degrees 3,996 Beppu university 2010-06-15 [Oligo Array] NimbleGen_Zymomonas mobilis ZM4_4x72K array (GPL10545) RNA Zymomonas mobilis subsp. mobilis ATCC 29191
Zymomonas mobilis subsp. mobilis ATCC 29191		 unclassified source_name:Zymomonas mobilis ZM6 RDM-4 strain cultivated under non-aerobic conditions at 38 degrees title:RDM4_static_culture_38_degrees description:This sample is of the RDM-4 strain of Zymomonas mobilis ZM6. Several RDM strains were isolated from the antibiotics-resistant mutants. The RDM-4 strain showed the most deficient respiration ability, grew well at 39ºC and produced ethanol well both in non-aerobic and aerobic conditions even at 39ºC. Because of the low yield of total RNA extracted at 39ºC, the condition of high-temperature was adopted at 38ºC. The gene expressions under a static culture at 38ºC were analyzed. RDM4_therm 38353502 SOM047NT
5 GSM260330 _1_cy3_Aerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_1_cy3_Aerobic_exponential_phase title:_1_cy3_Aerobic_exponential_phase description:exponential_phase__3h__F2_Aerobic
6 GSM260331 _1_cy5_Anaerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_1_cy5_Anaerobic_exponential_phase title:_1_cy5_Anaerobic_exponential_phase description:exponential_phase__3h__F5_Anaerobic
7 GSM260332 _2_cy3_Anaerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_2_cy3_Anaerobic_exponential_phase title:_2_cy3_Anaerobic_exponential_phase description:exponential_phase__3h__F5_Anaerobic
8 GSM260333 _2_cy5_Aerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_2_cy5_Aerobic_exponential_phase title:_2_cy5_Aerobic_exponential_phase description:exponential_phase__3h__F2_Aerobic
9 GSM260334 _3_cy3_Aerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_3_cy3_Aerobic_exponential_phase title:_3_cy3_Aerobic_exponential_phase description:exponential_phase__3h__F3_Aerobic
10 GSM260335 _3_cy5_Anaerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_3_cy5_Anaerobic_exponential_phase title:_3_cy5_Anaerobic_exponential_phase description:exponential_phase__3h__F6_Anaerobic
11 GSM260336 _4_cy3_Anaerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_4_cy3_Anaerobic_exponential_phase title:_4_cy3_Anaerobic_exponential_phase description:exponential_phase__3h__F6_Anaerobic
12 GSM260337 _4_cy5_Aerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_4_cy5_Aerobic_exponential_phase title:_4_cy5_Aerobic_exponential_phase description:exponential_phase__3h__F3_Aerobic
13 GSM260338 _5_cy3_Aerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_5_cy3_Aerobic_exponential_phase title:_5_cy3_Aerobic_exponential_phase description:exponential_phase__3h__F1_Aerobic
14 GSM260339 _5_cy5_Anaerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_5_cy5_Anaerobic_exponential_phase title:_5_cy5_Anaerobic_exponential_phase description:exponential_phase__3h__F4_Anaerobic
15 GSM260340 _6_cy3_Anaerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_6_cy3_Anaerobic_exponential_phase title:_6_cy3_Anaerobic_exponential_phase description:exponential_phase__3h__F4_Anaerobic
16 GSM260341 _6_cy5_Aerobic_exponential_phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_6_cy5_Aerobic_exponential_phase title:_6_cy5_Aerobic_exponential_phase description:exponential_phase__3h__F1_Aerobic
17 GSM260342 _7_cy3_Aerobic_Stationary_Phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_7_cy3_Aerobic_Stationary_Phase title:_7_cy3_Aerobic_Stationary_Phase description:Stationary_Phase__26h__F2_Aerobic
18 GSM260343 _7_cy5_Anaerobic_Stationary_Phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_7_cy5_Anaerobic_Stationary_Phase title:_7_cy5_Anaerobic_Stationary_Phase description:Stationary_Phase__26h__F5_Anaerobic
19 GSM260344 _8_cy3_Anaerobic_Stationary_Phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_8_cy3_Anaerobic_Stationary_Phase title:_8_cy3_Anaerobic_Stationary_Phase description:Stationary_Phase__26h__F5_Anaerobic
20 GSM260345 _8_cy5_Aerobic_Stationary_Phase 2,221 Science Apps, L3C 2008-01-28 [Oligo Array] ZMOBCombimatrixplatform (GPL6431) RNA Zymomonas mobilis
Zymomonas mobilis		 unclassified source_name:_8_cy5_Aerobic_Stationary_Phase title:_8_cy5_Aerobic_Stationary_Phase description:Stationary_Phase__26h__F2_Aerobic
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