Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,355)		   Tiling Array
(676)		   cDNA Array
(10,532)		   Oligo Array
(19,682)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(729)		   Other
(57)		   All
(39,082)		  
  brain
(0)		   blood
(0)		   connective
(1)		   reproductive
(0)		   muscular
(0)		   digestive
(24)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(32)		   all
(57)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM469950 GST control Protoarray replicate 1 19,200 Royal College of Surgeons in Ireland 2009-11-12 [Other] Invitrogen ProtoArray v4 human protein microarray lot HA20085 (GPL8590) protein Escherichia coli
Escherichia coli		 unclassified source_name:Biotinylated GST protein title:GST control Protoarray replicate 1 description:Glutathione S-transferase control protein
2 GSM60151 MMP_qualitative 1,289 University of Washington 2005-06-03 [Other] MMP_proteomic_qualitative (GPL2103) protein Methanococcus maripaludis
Methanococcus maripaludis		 unclassified source_name:Methanococcus maripaludis samples run through ion trap mass spectrometer in Murray Hackett's lab, Univ. of Washington title:MMP_qualitative description:Methanococccus maripaludis samples analyzed through ion trap mass spectrometer from Nov. 2002 to Jan. 2005
3 GSM958137 Control C3L0 1,266 IBERS 2012-07-09 [Other] SARST:Bacteria (GPL919) genomic Bacteria
Bacteria		 unclassified source_name:Rumen content title:Control C3L0 description:Sanger sequencing method
4 GSM958138 0.5g/d of yeast C3L1 1,266 IBERS 2012-07-09 [Other] SARST:Bacteria (GPL919) genomic Bacteria
Bacteria		 unclassified source_name:Rumen content title:0.5g/d of yeast C3L1 description:Sanger sequencing method
5 GSM958139 5g/d of yeast C3L2 1,266 IBERS 2012-07-09 [Other] SARST:Bacteria (GPL919) genomic Bacteria
Bacteria		 unclassified source_name:Rumen content title:5g/d of yeast C3L2 description:Sanger sequencing method
6 GSM35149 Alert Arctic tundra soil 1,051 University of British Columbia 2004-11-11 [Other] SARST:Bacteria (GPL919) SARST Bacteria
Bacteria		 unclassified source_name:Soil Sample Arctic site Alert title:Alert Arctic tundra soil description:Ribosomal sequence tag (RST) data from a composite soil sample from Alert, Nunavut Sample : Alert Date sampled : 980804 Observations : Dark, dry, and soft (humics) Composite # : 3 Depth : 10 cm Latitude : 82 30' N Longitude : 62 19' W GPS : NAD83, Zone 20, U E 509957, N 9160702 Location : Arctic Moisture : (% of dry weight) 19.0 Forest type : Alpine tundra Soil type : SiL Wet (g) : 60.3 Dry (g) : 50.68 pH : 7.6 C/N ratio : 31.4 Nitrate-N (ppm) : 1.7 Ammonium-N (ppm) : 12 Mineralizable-N (ppm) : Insufficient sample DNA (ug/g fresh soil) : 30.0 Organic Matter (%) : 9.2 Total Nitrogen (%) : 0.17 Phosphate (P; ppm) : 4 Potassium (K; ppm) : 66 Calcium (Ca; ppm) : 2900 Magnesium (Mg; ppm) : 180 Sulfate-S (ppm) : 16.2 Textural class : SiL Sand (VCS; #10-2.00mm) : 39.9 Silt (#270-0.053 mm) : 49.1 Clay (2 microns) : 11
7 GSM74211 PG_cKGM/KGM_001 977 University of Washington 2005-09-12 [Other] P. gingivalis cKGM/KGM proteomics study (GPL2841) protein Porphyromonas gingivalis
Porphyromonas gingivalis		 skin keratinocyte growth medium (KGM_001) conditioned keratinocyte growth medium (PG_cKGM)
8 GSM35164 Spanish soil composite 973 University of British Columbia 2004-11-11 [Other] SARST:Bacteria (GPL919) SARST Bacteria
Bacteria		 unclassified source_name:Soils from the Basque region of Spain differing in HCH contamination title:Spanish soil composite description:Ribosomal sequence tag (RST) data from a composite soil sample from hexachlorocyclohexane (HCH) contaminated and uncontaminated soils. Sites include Artxanda, Portugalete, and Ansio. Predominant RST sequences used to design oligonucleotide probes for microarray application.
9 GSM60152 MMP_S40_S2 939 University of Washington 2005-06-03 [Other] MMP_proteomic_quantitative (GPL2102) protein Methanococcus maripaludis
Methanococcus maripaludis		 unclassified source_name:S40 S2 title:MMP_S40_S2 description:Wild-type S2 vs EHB mutant S40
10 GSM35161 Montmorency boreal forest soil 906 University of British Columbia 2004-11-11 [Other] SARST:Bacteria (GPL919) SARST Bacteria
Bacteria		 unclassified source_name:Soil sample from Montmorency boreal forest title:Montmorency boreal forest soil description:Ribosomal sequence tag (RST) data from a composite soil sample from Montmorency, Quebec Sample : Montmorency Date sampled : 030909 Observations Composite # : 10 Depth : 10 cm Latitude : 47 19' 00'' N Longitude : 71 06' 00'' W GPS : NAD83, Zone 19, U E 341294, N 5242493 Location : Quebec (Montmorency) Moisture : (% of dry weight) 24.6 Forest type : Balsam fir boreal Soil type : Sandy loam Wet (g) : 534.5 Dry (g) : 428.9 pH : 4.7 C/N ratio : 25.3 Nitrate-N (ppm) : 13 Ammonium-N (ppm) : 6 Mineralizable-N (ppm) : 21 DNA (ug/g fresh soil) : 26.0 Organic Matter (%) : 6.1 Total Nitrogen (%) : 0.14 Phosphate (P; ppm) : 46 Potassium (K; ppm) : 19 Calcium (Ca; ppm) : 25 Magnesium (Mg; ppm) : 5 Sulfate-S (ppm) : 4.9 Textural class : Sandy loam Sand (VCS; #10-2.00mm) : 67.4 Silt (#270-0.053 mm) : 21.1 Clay (2 microns) : 11.5
11 GSM35162 Narrow Hills boreal forest soil 845 University of British Columbia 2004-11-11 [Other] SARST:Bacteria (GPL919) SARST Bacteria
Bacteria		 unclassified source_name:Soil sample from Narrow Hills boreal forest title:Narrow Hills boreal forest soil description:Ribosomal sequence tag (RST) data from a composite soil sample from Narrow Hills, Saskatchewan Sample : Narrow Hills Date sampled : 030624 Observations : Nice dark soil Composite # : 10 Depth : 10 cm Latitude : 53 54' 58" N Longitude : 104 41' 19" W GPS : NAD83, Zone 13, U E 0520453, N 5974249 Location : Saskatchewan Moisture : (% of dry weight) 7.9 Forest type : Jack Pine boreal Soil type : Sand Wet (g) : 416.1 Dry (g) : 385.5 pH : 5.3 C/N ratio : 37.1 Nitrate-N (ppm) : 3.6 Ammonium-N (ppm) : 4 Mineralizable-N (ppm) : 14 DNA (ug/g fresh soil) : 19.2 Organic Matter (%) : 3.2 Total Nitrogen (%) : 0.05 Phosphate (P; ppm) : 14 Potassium (K; ppm) : 39 Calcium (Ca; ppm) : 400 Magnesium (Mg; ppm) : 28 Sulfate-S (ppm) : 2.6 Textural class : Sand Sand (VCS; #10-2.00mm) : 91.2 Silt (#270-0.053 mm) : 5.7 Clay (2 microns) : 3.1
12 GSM14854 Nadluardjuk Lake Arctic tundra soil (FOX-B), replicate 1 676 University of British Columbia 2004-01-07 [Other] SARST:Bacteria (GPL919) SARST Bacteria
Bacteria		 unclassified source_name:soil sample Arctic site Nadluardjuk Lake (FOX-B) title:Nadluardjuk Lake Arctic tundra soil (FOX-B), replicate 1 description:Ribosomal sequence tag (RST) data from a composite soil sample from Nadluardjuk Lake, replicate 1. Sample : Nadluardjuk Lake (FOX-B1) Date sampled : 020815 Observations : Dark, dry, and soft (humics) Composite # : 10 Depth : 10 cm Latitude : 73 12' N Longitude : 68 37' W GPS : NAD83, Zone 19, U E512366, N 8122830 Location : Hall Beach, Baffin Island, Canada Moisture (% of dry weight) : 2.5 Forest type : Alpine tundra Soil type : Sandy Loam Wet (g) : 183.4 Dry (g) : 178.9 pH : 5.3 C/N ratio : 16.0 Nitrate-N (ppm) : 0.2 Ammonium-N (ppm) : 4.7 Mineralizable-N (ppm) : 3.8 DNA (ug/g fresh soil) : 8.5 Organic Matter (%) : 1.38 Total Nitrogen (%) : 0.05 Phosphate (P; ppm) : 9 Potassium (K; ppm) : 23 Calcium (Ca; ppm) : 50 Magnesium (Mg; ppm) : 10 Sulfate-S (ppm) : 2.8 Textural class : Sandy loam Sand (VCS; #10-2.00mm) : 69.9 Silt (#270-0.053 mm) : 28.8 Clay (2 microns) : 1.3 Lot batch =
13 GSM14855 Nadluardjuk Lake Arctic tundra soil (FOX-B), replicate 2 642 University of British Columbia 2004-01-07 [Other] SARST:Bacteria (GPL919) SARST Bacteria
Bacteria		 unclassified source_name:soil sample Arctic site Nadluardjuk Lake (FOX-B) title:Nadluardjuk Lake Arctic tundra soil (FOX-B), replicate 2 description:Ribosomal sequence tag (RST) data from a composite soil sample from Nadluardjuk Lake, replicate 2. Sample : Nadluardjuk Lake (FOX-B2) Date sampled : 020815 Observations : Dark, dry, and soft (humics) Composite # : 10 Depth : 10 cm Latitude : 73 12' N Longitude : 68 37' W GPS : NAD83, Zone 19, U E512366, N 8122830 Location : Hall Beach, Baffin Island, Canada Moisture (% of dry weight) : 2.5 Forest type : Alpine tundra Soil type : Sandy Loam Wet (g) : 183.4 Dry (g) : 178.9 pH : 5.3 C/N ratio : 16.0 Nitrate-N (ppm) : 0.2 Ammonium-N (ppm) : 4.7 Mineralizable-N (ppm) : 3.8 DNA (ug/g fresh soil) : 8.5 Organic Matter (%) : 1.38 Total Nitrogen (%) : 0.05 Phosphate (P; ppm) : 9 Potassium (K; ppm) : 23 Calcium (Ca; ppm) : 50 Magnesium (Mg; ppm) : 10 Sulfate-S (ppm) : 2.8 Textural class : Sandy loam Sand (VCS; #10-2.00mm) : 69.9 Silt (#270-0.053 mm) : 28.8 Clay (2 microns) : 1.3 Lot batch =
14 GSM35163 Peace River boreal forest soil 608 University of British Columbia 2004-11-11 [Other] SARST:Bacteria (GPL919) SARST Bacteria
Bacteria		 unclassified source_name:Soil sample from Peace River boreal forest title:Peace River boreal forest soil description:Ribosomal sequence tag (RST) data from a composite soil sample from Peace River, Alberta Sample : Peace River Date sampled : 030613 Observations : Wet, clay-like, hard to mix composite Composite # : 10 Depth : 10 cm Latitude : 56 46' 13'' N Longitude : 118 22' 28'' W GPS : NAD83, Zone 11, U E 415994, N 6292657 Location : Alberta (EMEND) Moisture (% of dry weight) : 27.2 Forest type : Mixedwood boreal Soil type : SiL Wet (g) : 262.6 Dry (g) : 206.4 pH : 4.5 C/N ratio : 24.4 Nitrate-N (ppm) : 3.3 Ammonium-N (ppm) : 6 Mineralizable-N (ppm) : 8.8 DNA (ug/g fresh soil) : 19.3 Organic Matter (%) : 6.3 Total Nitrogen (%) : 0.15 Phosphate (P; ppm) : 45 Potassium (K; ppm) : 210 Calcium (Ca; ppm) : 1300 Magnesium (Mg; ppm) : 225 Sulfate-S (ppm) : 6 Textural class : SiL Sand (VCS; #10-2.00mm) : 23.8 Silt (#270-0.053 mm) : 50 Clay (2 microns) : 26.2
15 GSM35159 Cape Dyer Arctic tundra soil (disturbed soil) 511 University of British Columbia 2004-11-11 [Other] SARST:Bacteria (GPL919) SARST Bacteria
Bacteria		 unclassified source_name:soil sample Arctic site Cape Dyer title:Cape Dyer Arctic tundra soil (disturbed soil) description:Ribosomal sequence tag (RST) data from a composite soil sample from Cape Dyer, Nunavut Sample : Cape Dyer Date sampled : 021104 Observations : Very wet, clay (compacted pad beneath fuel storage tank) Composite # : 3 Depth : 50-140 cm Latitude : 66 36' 4'' N Longitude : 61 34' 33'' W GPS : NAD83, Zone 20, U E 563108, N 7387634 Location : Arctic Moisture : (% of dry weight) 11.0 Forest type : disturbed Alpine tundra Soil type : LS Wet (g) : 387.1 Dry (g) : 348.6 pH : 6 C/N ratio : 8.7 Nitrate-N (ppm) : <0.1 Ammonium-N (ppm) : 2 Mineralizable-N (ppm) : 5 DNA (ug/g fresh soil) : 0.4 Organic Matter (%) : 0.3 Total Nitrogen (%) : 0.02 Phosphate (P; ppm) : 10 Potassium (K; ppm) : 60 Calcium (Ca; ppm) : 350 Magnesium (Mg; ppm) : 90 Sulfate-S (ppm) : 4.6 Textural class : LS Sand (VCS; #10-2.00mm) : 82.9 Silt (#270-0.053 mm) : 12.1 Clay (2 microns) : 5
16 GSM958134 Control C2L0 488 IBERS 2012-07-09 [Other] SARST:Bacteria (GPL919) genomic Bacteria
Bacteria		 unclassified source_name:Rumen content title:Control C2L0 description:Sanger sequencing method
17 GSM958135 0.5g/d of yeast C2L1 488 IBERS 2012-07-09 [Other] SARST:Bacteria (GPL919) genomic Bacteria
Bacteria		 unclassified source_name:Rumen content title:0.5g/d of yeast C2L1 description:Sanger sequencing method
18 GSM958136 5g/d of yeast C2L2 488 IBERS 2012-07-09 [Other] SARST:Bacteria (GPL919) genomic Bacteria
Bacteria		 unclassified source_name:Rumen content title:5g/d of yeast C2L2 description:Sanger sequencing method
19 GSM958132 0.5g/d of yeast C1L1 265 IBERS 2012-07-09 [Other] SARST:Bacteria (GPL919) genomic Bacteria
Bacteria		 unclassified source_name:Rumen content title:0.5g/d of yeast C1L1 description:Sanger sequencing method
20 GSM958133 5g/d of yeast C1L2 265 IBERS 2012-07-09 [Other] SARST:Bacteria (GPL919) genomic Bacteria
Bacteria		 unclassified source_name:Rumen content title:5g/d of yeast C1L2 description:Sanger sequencing method
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