Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,355)		   Tiling Array
(676)		   cDNA Array
(10,532)		   Oligo Array
(19,682)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(729)		   Other
(57)		   All
(39,082)		  
  brain
(0)		   blood
(20)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(6)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(650)		   all
(676)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM978041 RpoHII replicate 3 353,081 University of Wisconsin - Madison 2012-07-29 [Tiling Array] UW_Rhodobacter_sphaeroides_2.4.1_385K_v2 (GPL10463) genomic Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:RpoHII ChIP DNA Input DNA title:RpoHII replicate 3
2 GSM978040 RpoHII replicate 2 353,081 University of Wisconsin - Madison 2012-07-29 [Tiling Array] UW_Rhodobacter_sphaeroides_2.4.1_385K_v2 (GPL10463) genomic Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:RpoHII ChIP DNA Input DNA title:RpoHII replicate 2
3 GSM978039 RpoHII replicate 1 353,081 University of Wisconsin - Madison 2012-07-29 [Tiling Array] UW_Rhodobacter_sphaeroides_2.4.1_385K_v2 (GPL10463) genomic Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:RpoHII ChIP DNA Input DNA title:RpoHII replicate 1
4 GSM978038 RpoHI_FLAG replicate 3 353,081 University of Wisconsin - Madison 2012-07-29 [Tiling Array] UW_Rhodobacter_sphaeroides_2.4.1_385K_v2 (GPL10463) genomic Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:RpoHI_FLAG ChIP DNA Input DNA title:RpoHI_FLAG replicate 3
5 GSM978037 RpoHI_FLAG replicate 2 353,081 University of Wisconsin - Madison 2012-07-29 [Tiling Array] UW_Rhodobacter_sphaeroides_2.4.1_385K_v2 (GPL10463) genomic Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:RpoHI_FLAG ChIP DNA Input DNA title:RpoHI_FLAG replicate 2
6 GSM978036 RpoHI_FLAG replicate 1 353,081 University of Wisconsin - Madison 2012-07-29 [Tiling Array] UW_Rhodobacter_sphaeroides_2.4.1_385K_v2 (GPL10463) genomic Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:RpoHI_FLAG ChIP DNA Input DNA title:RpoHI_FLAG replicate 1
7 GSM973517 Pf0-1(pCAR1)_8hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas fluorescens
Pseudomonas fluorescens		 unclassified source_name:cDNA prepared from succinate culture of Pf0-1(pCAR1) title:Pf0-1(pCAR1)_8hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
8 GSM973516 Pf0-1(pCAR1)_6hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas fluorescens
Pseudomonas fluorescens		 unclassified source_name:cDNA prepared from succinate culture of Pf0-1(pCAR1) title:Pf0-1(pCAR1)_6hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
9 GSM973515 Pf0-1(pCAR1)_4hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas fluorescens
Pseudomonas fluorescens		 unclassified source_name:cDNA prepared from succinate culture of Pf0-1(pCAR1) title:Pf0-1(pCAR1)_4hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
10 GSM973514 Pf0-1(pCAR1)_2hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas fluorescens
Pseudomonas fluorescens		 unclassified source_name:cDNA prepared from succinate culture of Pf0-1(pCAR1) title:Pf0-1(pCAR1)_2hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
11 GSM973513 PAO1(pCAR1)_8hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa		 unclassified source_name:cDNA prepared from succinate culture of PAO1(pCAR1) title:PAO1(pCAR1)_8hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
12 GSM973512 PAO1(pCAR1)_6hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa		 unclassified source_name:cDNA prepared from succinate culture of PAO1(pCAR1) title:PAO1(pCAR1)_6hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
13 GSM973511 PAO1(pCAR1)_4hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa		 unclassified source_name:cDNA prepared from succinate culture of PAO1(pCAR1) title:PAO1(pCAR1)_4hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
14 GSM973510 PAO1(pCAR1)_2hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa		 unclassified source_name:cDNA prepared from succinate culture of PAO1(pCAR1) title:PAO1(pCAR1)_2hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
15 GSM973509 KT2440(pCAR1)_8hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida		 unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1) title:KT2440(pCAR1)_8hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
16 GSM973508 KT2440(pCAR1)_6hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida		 unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1) title:KT2440(pCAR1)_6hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
17 GSM973507 KT2440(pCAR1)_4hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida		 unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1) title:KT2440(pCAR1)_4hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
18 GSM973506 KT2440(pCAR1)_2hr_IncP-7 array 0 The University of Tokyo 2012-07-25 [Tiling Array] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida		 unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1) title:KT2440(pCAR1)_2hr_IncP-7 array description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
19 GSM973505 Pf0-1(pCAR1)_8hr 0 The University of Tokyo 2012-07-25 [Tiling Array] Pseudomonas fluorescens Pf0-1 chromosome array (GPL8298) RNA Pseudomonas fluorescens
Pseudomonas fluorescens		 unclassified source_name:cDNA prepared from succinate culture of Pf0-1(pCAR1) title:Pf0-1(pCAR1)_8hr description:This is an Affymetrix custom-commercial tiling array that covers thePseudomonas fluorescens Pf0-1 chromosome (RefSeq: NC_007492) at 11-bp density. BPMAP files are provided as supplementary files. PFO1b520543F-3-REV.bpmap represents the forward strand of Pf0-1 chromosome, and PFO1b520543F-3-FWD.bpmap represents the reverse strand of Pf0-1 chromosome.
20 GSM973504 Pf0-1(pCAR1)_6hr 0 The University of Tokyo 2012-07-25 [Tiling Array] Pseudomonas fluorescens Pf0-1 chromosome array (GPL8298) RNA Pseudomonas fluorescens
Pseudomonas fluorescens		 unclassified source_name:cDNA prepared from succinate culture of Pf0-1(pCAR1) title:Pf0-1(pCAR1)_6hr description:This is an Affymetrix custom-commercial tiling array that covers thePseudomonas fluorescens Pf0-1 chromosome (RefSeq: NC_007492) at 11-bp density. BPMAP files are provided as supplementary files. PFO1b520543F-3-REV.bpmap represents the forward strand of Pf0-1 chromosome, and PFO1b520543F-3-FWD.bpmap represents the reverse strand of Pf0-1 chromosome.
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