Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(8,349)
  Tiling Array
(1,464)
  cDNA Array
(10,807)
  Oligo Array
(21,920)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(51)
  HT-Seq
(2,336)
  Other
(164)
  All
(45,091)
 
  brain
(0)
  blood
(54)
  connective
(6)
  reproductive
(0)
  muscular
(0)
  digestive
(9)
  liver
(0)
  lung
(0)
  urinary
(1)
  endo/exo-crine
(6)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(1,388)
  all
(1,464)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1281602 KT2440(pCAR1) 0 The University of Tokyo 2013-12-06 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1) title:KT2440(pCAR1) description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
2 GSM1281603 KT2440(pCAR1Dpmr) 0 The University of Tokyo 2013-12-06 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1Dpmr) title:KT2440(pCAR1Dpmr) description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
3 GSM1281604 KT2440(pCAR1Dpnd) 0 The University of Tokyo 2013-12-06 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1Dpnd) title:KT2440(pCAR1Dpnd) description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
4 GSM1281605 KT2440(pCAR1Dphu) 0 The University of Tokyo 2013-12-06 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1Dphu) title:KT2440(pCAR1Dphu) description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
5 GSM1281606 KT2440(pCAR1DpmrDpnd) 0 The University of Tokyo 2013-12-06 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1DpmrDpnd) title:KT2440(pCAR1DpmrDpnd) description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
6 GSM1281607 KT2440(pCAR1DpmrDphu) 0 The University of Tokyo 2013-12-06 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1DpmrDphu) title:KT2440(pCAR1DpmrDphu) description:This is an Affymetrix custom-commercial tiling array that covers the IncP-7 carbazole-degradative plasmid pCAR1 (RefSeq: NC_004444.1) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FR-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FF-3.bpmap represents the reverse strand of pCAR1.
7 GSM275463 CA10_succinate_rep1_and_rep2 0 Tohoku University 2008-03-17 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas resinovorans
Pseudomonas resinovorans
unclassified source_name:Pseudomonas resinovorans CA10 grown on succinate at exponential phase title:CA10_succinate_rep1_and_rep2 description:CA10_succinate_rep1_and_rep2
8 GSM275464 CA10_carbazole_rep1_and_rep2 0 Tohoku University 2008-03-17 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas resinovorans
Pseudomonas resinovorans
unclassified source_name:Pseudomonas resinovorans CA10 grown on carbazole at exponential phase title:CA10_carbazole_rep1_and_rep2 description:CA10_carbazole_rep1_and_rep2
9 GSM275465 KT2440(pCAR1)_succinate_rep1_and_rep2 0 Tohoku University 2008-03-17 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:Pseudomonas putida KT2440(pCAR1) grown on succinate at exponential phase title:KT2440(pCAR1)_succinate_rep1_and_rep2 description:KT2440(pCAR1)_succinate_rep1_and_rep2
10 GSM275466 KT2440(pCAR1)_carbazole_rep1_and_rep2 0 Tohoku University 2008-03-17 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:Pseudomonas putida KT2440(pCAR1) grown on carbazole at exponential phase title:KT2440(pCAR1)_carbazole_rep1_and_rep2 description:KT2440(pCAR1)_carbazole_rep1_and_rep2
11 GSM380019 KT2440(pCAR1)_CustomExpress IncP-7 plasmid pCAR1 Tiling Array 0 The University of Tokyo 2009-03-13 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida KT2440
Pseudomonas putida KT2440
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1) title:KT2440(pCAR1)_CustomExpress IncP-7 plasmid pCAR1 Tiling Array description:RNA mapping on pCAR1 carried by KT2440
12 GSM380020 PAO1(pCAR1)_CustomExpress IncP-7 plasmid pCAR1 Tiling Array 0 The University of Tokyo 2009-03-13 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa PAO1
unclassified source_name:cDNA prepared from succinate culture of PAO1(pCAR1) title:PAO1(pCAR1)_CustomExpress IncP-7 plasmid pCAR1 Tiling Array description:RNA mapping on pCAR1 carried by PAO1
13 GSM380021 Pf0-1(pCAR1)_CustomExpress IncP-7 plasmid pCAR1 Tiling Array 0 The University of Tokyo 2009-03-13 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas fluorescens Pf0-1
Pseudomonas fluorescens Pf0-1
unclassified source_name:cDNA prepared from succinate culture of Pf0-1(pCAR1) title:Pf0-1(pCAR1)_CustomExpress IncP-7 plasmid pCAR1 Tiling Array description:RNA mapping on pCAR1 carried by Pf0-1
14 GSM546283 KTPC_pCAR1_Pmr_His_4h 0 The University of Tokyo 2010-05-24 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) genomic Pseudomonas putida
Pseudomonas putida
unclassified source_name:His-tag ChIP DNA in P.putida KT2440 (pCAR1); Pmr-His Input DNA from P.putida KT2440 (pCAR1); Pmr-His title:KTPC_pCAR1_Pmr_His_4h description:Pmr binding sites detection on the pCAR1
15 GSM546288 KTPCdpmr_pCAR1_01 0 The University of Tokyo 2010-05-24 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1)deltaPmr title:KTPCdpmr_pCAR1_01 description:This is an Affymetrix custom-commercial tiling array that covers the plasmid pCAR1 (RefSeq: AB088420) at 11-bp density.
16 GSM546289 KTPCdpmr_pCAR1_02 0 The University of Tokyo 2010-05-24 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1)deltaPmr title:KTPCdpmr_pCAR1_02 description:This is an Affymetrix custom-commercial tiling array that covers the plasmid pCAR1 (RefSeq: AB088420) at 11-bp density.
17 GSM707304 KT2440 (pCAR1) 0 The University of Tokyo 2011-04-12 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas putida
Pseudomonas putida
unclassified source_name:cDNA prepared from succinate culture of KT2440(pCAR1) title:KT2440 (pCAR1) description:RNA mapping on pCAR1 carried by KT2440
18 GSM707305 CA10 (pCAR1) 0 The University of Tokyo 2011-04-12 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas resinovorans
Pseudomonas resinovorans
unclassified source_name:cDNA prepared from succinate culture of CA10 title:CA10 (pCAR1) description:RNA mapping on pCAR1 carried by CA10
19 GSM707306 PAO1 (pCAR1) 0 The University of Tokyo 2011-04-12 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:cDNA prepared from succinate culture of PAO1(pCAR1) title:PAO1 (pCAR1) description:RNA mapping on pCAR1 carried by PAO1
20 GSM707307 Pf0-1 (pCAR1) 0 The University of Tokyo 2011-04-12 [Tiling Array] [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array (GPL6591) RNA Pseudomonas fluorescens
Pseudomonas fluorescens
unclassified source_name:cDNA prepared from succinate culture of Pf0-1(pCAR1) title:Pf0-1 (pCAR1) description:RNA mapping on pCAR1 carried by Pf0-1
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