Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Bacteria
(39,613)

Viruses
(1,263)

Phages
(101)

Unclassified
(5,497)

All
(931,947)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(7,463)

Tiling Array
(684)

cDNA Array
(10,536)

Oligo Array
(19,945)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

brain
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(6)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(0)

unclassified
(652)

all
(684)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM1099266	LB	2,023,636	University of California	2013-03-15	[Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797)	RNA	Shewanella oneidensis MR-1	unclassified	source_name:MR-1 grown in rich LB medium title:LB description:cDNA
2	GSM1099267	DMSO	2,023,636	University of California	2013-03-15	[Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797)	RNA	Shewanella oneidensis MR-1	unclassified	source_name:MR-1 grown in minimal lactate medium anaerobically with dimethyl sulfoxide as the electron acceptor title:DMSO description:cDNA
3	GSM1099268	FE	2,023,636	University of California	2013-03-15	[Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797)	RNA	Shewanella oneidensis MR-1	unclassified	source_name:MR-1 grown in minimal lactate medium anaerobically with iron (III) citrate as the electron acceptor title:FE description:cDNA
4	GSM1099269	HS	2,023,636	University of California	2013-03-15	[Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797)	RNA	Shewanella oneidensis MR-1	unclassified	source_name:MR-1 heat shocked for 10 minutes at 42 oC. title:HS description:cDNA
5	GSM969798	MM	1,937,190	Lawrence Berkeley Lab	2012-07-18	[Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling [NimbleGen_MR1_2005K_1] (GPL15823)	RNA	Shewanella oneidensis MR-1	unclassified	source_name:Mid-log-phase MR-1 in minimal lactate medium title:MM description:mRNA hyb
6	GSM635865	BAPHK_cDNA1 transcriptome profile	409,807	The Forsyth Institute	2010-12-07	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	peripheral blood	Laboratory culture on BAPHK blood plate
7	GSM635866	BAPHK_cDNA2 transcriptome profile	409,807	The Forsyth Institute	2010-12-07	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	peripheral blood	Laboratory culture on BAPHK blood plate
8	GSM635883	BAPHK_cDNA3 transcriptome profile	409,807	The Forsyth Institute	2010-12-07	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	peripheral blood	Laboratory culture on BAPHK blood plate
9	GSM635902	BAPHK_R15 transcriptome profile	409,807	The Forsyth Institute	2010-12-07	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	peripheral blood	Laboratory culture on BAPHK blood plate
10	GSM635903	BAPHK_R16 transcriptome profile	409,807	The Forsyth Institute	2010-12-07	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	peripheral blood	Laboratory culture on BAPHK blood plate
11	GSM768217	BAPHK_R15 transcriptome profile SVR	409,807	The Forsyth Institute	2011-07-27	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	peripheral blood	Laboratory culture on BAPHK blood plate
12	GSM768219	BAPHK_R16 transcriptome profile SVR	409,807	The Forsyth Institute	2011-07-27	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	peripheral blood	Laboratory culture on BAPHK blood plate
13	GSM768553	MIN_R1 transcriptome profile SVR	409,807	The Forsyth Institute	2011-07-28	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	unclassified	source_name:Laboratory culture in MIN medium title:MIN_R1 transcriptome profile SVR
14	GSM768555	MIN_R2 transcriptome profile SVR	409,807	The Forsyth Institute	2011-07-28	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	unclassified	source_name:Laboratory culture in MIN medium title:MIN_R2 transcriptome profile SVR
15	GSM768556	MIN_R3 transcriptome profile SVR	409,807	The Forsyth Institute	2011-07-28	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	unclassified	source_name:Laboratory culture in MIN medium title:MIN_R3 transcriptome profile SVR
16	GSM768558	TSB_R2 transcriptome profile SVR	409,807	The Forsyth Institute	2011-07-28	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	unclassified	source_name:Laboratory culture in TSB medium title:TSB_R2 transcriptome profile SVR
17	GSM768560	TSB_R4 transcriptome profile SVR	409,807	The Forsyth Institute	2011-07-28	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	unclassified	source_name:Laboratory culture in TSB medium title:TSB_R4 transcriptome profile SVR
18	GSM768561	TSB_R5 transcriptome profile SVR	409,807	The Forsyth Institute	2011-07-28	[Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291)	RNA	Porphyromonas gingivalis	unclassified	source_name:Laboratory culture in TSB medium title:TSB_R5 transcriptome profile SVR
19	GSM396427	Total RNA sample from Cmyc tagged TFBd, Halobacterium NRC-1. Array 77972	385,440	Institute for Systems Biology	2009-04-23	[Tiling Array] NimbleGen Halobacterium 385K tiling array (GPL8468)	RNA	Halobacterium sp. NRC-1	unclassified	source_name:Halobacterium NRC1, Reference RNA Halobacterium NRC1, total RNA sample from Cmyc tagged TFBd title:Total RNA sample from Cmyc tagged TFBd, Halobacterium NRC-1. Array 77972 description:RNA sample of Cmyc tagged TFBd expressed in Halobacterium NRC-1 cells transformed with pMTFcmyc gene expressing TFBd in standard growth media with 20microgram/ml mevinolin versus a Reference RNA sample.
20	GSM396429	Total RNA sample from Cmyc tagged TFBd, Halobacterium NRC-1. Array 95767	385,440	Institute for Systems Biology	2009-04-23	[Tiling Array] NimbleGen Halobacterium 385K tiling array (GPL8468)	RNA	Halobacterium sp. NRC-1	unclassified	source_name:Halobacterium NRC1, total RNA sample from Cmyc tagged TFBd Halobacterium NRC1, Reference RNA title:Total RNA sample from Cmyc tagged TFBd, Halobacterium NRC-1. Array 95767 description:RNA sample of Cmyc tagged TFBd expressed in Halobacterium NRC-1 cells transformed with pMTFcmyc gene expressing TFBd in standard growth media with 20microgram/ml mevinolin versus a Reference RNA sample.

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