Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,355)		   Tiling Array
(676)		   cDNA Array
(10,532)		   Oligo Array
(19,682)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(729)		   Other
(57)		   All
(39,082)		  
  brain
(0)		   blood
(20)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(6)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(650)		   all
(676)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM109610 Salmonella typhimurium 14028 Hns ChIP-Chip rep 1 382,864 Vaccine Research Institute of San Diego 2006-05-19 [Tiling Array] SKCC Salmonella 380K tiling array (GPL3786) genomic Salmonella
Salmonella		 unclassified source_name:Salmonella typhimurium 14028 title:Salmonella typhimurium 14028 Hns ChIP-Chip rep 1 description:The array was hybridized with genomic DNA and hns-bound DNA from a chromatin immunoprecipitation.
2 GSM109611 Salmonella typhimurium 14028 Hns ChIP-Chip rep 2 382,864 Vaccine Research Institute of San Diego 2006-05-19 [Tiling Array] SKCC Salmonella 380K tiling array (GPL3786) genomic Salmonella
Salmonella		 unclassified source_name:Salmonella typhimurium 14028 title:Salmonella typhimurium 14028 Hns ChIP-Chip rep 2 description:The array was hybridized with genomic DNA and hns-bound DNA from a chromatin immunoprecipitation.
3 GSM1027885 MDS42 RNAP 1 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MDS42 cells Input DNA from MDS42 cells title:MDS42 RNAP 1 description:ChIP-chip MDS42 cells RNAP
4 GSM1027886 MDS42 RNAP 2 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MDS42 cells Input DNA from MDS42 cells title:MDS42 RNAP 2 description:ChIP-chip MDS42 cells RNAP
5 GSM1027887 MDS42 ΔnusG RNAP 1 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MDS42 ΔnusG cells Input DNA from MDS42 ΔnusG cells title:MDS42 ΔnusG RNAP 1 description:ChIP-chip MDS42 ΔnusG cells RNAP
6 GSM1027888 MDS42 ΔnusG RNAP 2 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MDS42 ΔnusG cells Input DNA from MDS42 ΔnusG cells title:MDS42 ΔnusG RNAP 2 description:ChIP-chip MDS42 ΔnusG cells RNAP
7 GSM1027889 MDS42 ΔnusA* RNAP 1 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MDS42 ΔnusA* cells Input DNA from MDS42 ΔnusA* cells title:MDS42 ΔnusA* RNAP 1 description:ChIP-chip MDS42 ΔnusA* cells RNAP
8 GSM1027890 MDS42 ΔnusA* RNAP 2 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MDS42 ΔnusA* cells Input DNA from MDS42 ΔnusA* cells title:MDS42 ΔnusA* RNAP 2 description:ChIP-chip MDS42 ΔnusA* cells RNAP
9 GSM1027891 MG1655 H-NS 1 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:H-NS ChIP DNA from MG1655 cells Input DNA from MG1655 cells title:MG1655 H-NS 1 description:ChIP-chip MG1655 cells H-NS
10 GSM1027892 MG1655 H-NS 2 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:H-NS ChIP DNA from MG1655 cells Input DNA from MG1655 cells title:MG1655 H-NS 2 description:ChIP-chip MG1655 cells H-NS
11 GSM1027893 MG1655 RNAP 1 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MG1655 cells Input DNA from MG1655 cells title:MG1655 RNAP 1 description:ChIP-chip MG1655 cells RNAP
12 GSM1027894 MG1655 RNAP 2 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MG1655 cells Input DNA from MG1655 cells title:MG1655 RNAP 2 description:ChIP-chip MG1655 cells RNAP
13 GSM1027895 MG1655 Δhns RNAP 1 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MG1655 Δhns cells Input DNA from MG1655 Δhns cells title:MG1655 Δhns RNAP 1 description:ChIP-chip MG1655 Δhns cells RNAP
14 GSM1027896 MG1655 Δhns RNAP 2 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) genomic Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:RNAP ChIP DNA from MG1655 Δhns cells Input DNA from MG1655 Δhns cells title:MG1655 Δhns RNAP 2 description:ChIP-chip MG1655 Δhns cells RNAP
15 GSM1027897 Δrac 1 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) RNA Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:Δrac title:Δrac 1 description:tiling expression microarray Δrac cells
16 GSM1027898 Δrac 2 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) RNA Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:Δrac title:Δrac 2 description:tiling expression microarray Δrac cells
17 GSM1027899 Δrac + 20 ug/ml bicyclomycin 1 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) RNA Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:Δrac + 20 ug/ml bicyclomycin title:Δrac + 20 ug/ml bicyclomycin 1 description:tiling expression microarray Δrac cells treated with bicyclomycin
18 GSM1027900 Δrac + 20 ug/ml bicyclomycin 2 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) RNA Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:Δrac + 20 ug/ml bicyclomycin title:Δrac + 20 ug/ml bicyclomycin 2 description:tiling expression microarray Δrac cells treated with bicyclomycin
19 GSM1027901 Δrac ΔnusG 1 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) RNA Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:Δrac ΔnusG title:Δrac ΔnusG 1 description:tiling expression microarray Δrac ΔnusG cells
20 GSM1027902 Δrac ΔnusG 2 378,238 UW-Madison 2012-10-31 [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) RNA Escherichia coli K-12
Escherichia coli K-12		 unclassified source_name:Δrac ΔnusG title:Δrac ΔnusG 2 description:tiling expression microarray Δrac ΔnusG cells
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