Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,355)		   Tiling Array
(676)		   cDNA Array
(10,532)		   Oligo Array
(19,682)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(729)		   Other
(57)		   All
(39,082)		  
  brain
(0)		   blood
(20)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(6)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(650)		   all
(676)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM794092 WT_STP 0 Columbia University 2011-09-09 [Tiling Array] Escherichia coli whole-genome tiling array (2 x 105K) (GPL10286) genomic Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:WT Transposon mutagenized library_M9t/glucose WT Transposon mutagenized library_M9t/glucose + streptomycin (1.25 mg/L) title:WT_STP description:Two biological replicates (1-1, 1-2). Comparison of transposon insertion abundances in libraries grown under selective vs. reference conditions.
2 GSM794091 WT_NADM 0 Columbia University 2011-09-09 [Tiling Array] Escherichia coli whole-genome tiling array (2 x 105K) (GPL10286) genomic Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:WT Transposon mutagenized library_M9t/glucose WT Transposon mutagenized library_M9t/NADM title:WT_NADM description:Two biological replicates (1-1, 1-2). Comparison of transposon insertion abundances in libraries grown under selective vs. reference conditions.
3 GSM794090 WT_CML 0 Columbia University 2011-09-09 [Tiling Array] Escherichia coli whole-genome tiling array (2 x 105K) (GPL10286) genomic Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 bone marrow WT_CML
4 GSM794089 WT_AKG 0 Columbia University 2011-09-09 [Tiling Array] Escherichia coli whole-genome tiling array (2 x 105K) (GPL10286) genomic Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:WT Transposon mutagenized library_M9t/glucose WT Transposon mutagenized library_M9t/AKG title:WT_AKG description:Two biological replicates (1-1, 1-2). Comparison of transposon insertion abundances in libraries grown under selective vs. reference conditions.
5 GSM462173 Wildtype late exponential 382,202 KULeuven 2009-10-15 [Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409) RNA Rhizobium etli CFN 42
Rhizobium etli CFN 42		 unclassified source_name:Wildtype R. etli CFN42 at OD600 = 0.7 title:Wildtype late exponential description:Wild-type R. etli CFN42 was grown at 30ËšC in acid minimal salts medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Samples were taken at OD600 = 0.7, representing late exponential phase.
6 GSM462180 Wildtype early stationary 382,202 KULeuven 2009-10-15 [Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409) RNA Rhizobium etli CFN 42
Rhizobium etli CFN 42		 unclassified source_name:Wildtype R. etli CFN42 6 hours after reaching the maximum OD title:Wildtype early stationary description:Wild-type R. etli CFN42 was grown at 30ËšC in acid minimal salts medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Samples were taken 6 hours after reaching the maximum OD, representing early stationary phase.
7 GSM462178 Wildtype early exponential 382,202 KULeuven 2009-10-15 [Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409) RNA Rhizobium etli CFN 42
Rhizobium etli CFN 42		 unclassified source_name:Wildtype R. etli CFN42 at OD600 = 0.3 title:Wildtype early exponential description:Wild-type R. etli CFN42 was grown at 30ËšC in acid minimal salts medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Samples were taken at OD600 = 0.3, representing early exponential phase.
8 GSM510268 W1-111 385,000 Illinois Insititute of Technology 2010-02-17 [Tiling Array] CBCB Listeria monocytogenes 385K v1.0 (GPL8942) genomic Listeria monocytogenes
Listeria monocytogenes		 unclassified source_name:Genomic DNA from Listeria monocytogenes W1-111 title:W1-111 description:CGH sample
9 GSM510269 W1-110 385,000 Illinois Insititute of Technology 2010-02-17 [Tiling Array] CBCB Listeria monocytogenes 385K v1.0 (GPL8942) genomic Listeria monocytogenes
Listeria monocytogenes		 unclassified source_name:Genomic DNA from Listeria monocytogenes W1-110 title:W1-110 description:CGH sample
10 GSM775833 vector/Δura3ΔtfbD_temp-37C_od-0.834_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:vector in Δura3ΔtfbD knockout at 37C OD600= 0.834 Halobacterium NRC-1 Reference sample title:vector/Δura3ΔtfbD_temp-37C_od-0.834_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring control plasmid grown in CM at 37C until OD600= 0.834 vs NRC-1
11 GSM775832 vector/Δura3ΔtfbD_temp-37C_od-0.485_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:vector in Δura3ΔtfbD knockout at 37C OD600= 0.485 Halobacterium NRC-1 Reference sample title:vector/Δura3ΔtfbD_temp-37C_od-0.485_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring control plasmid grown in CM at 37C until OD600= 0.485 vs NRC-1
12 GSM775831 vector/Δura3ΔtfbD_temp-37C_od-0.236_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:vector in Δura3ΔtfbD knockout at 37C OD600= 0.236 Halobacterium NRC-1 Reference sample title:vector/Δura3ΔtfbD_temp-37C_od-0.236_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring control plasmid grown in CM at 37C until OD600= 0.236 vs NRC-1
13 GSM775836 vector/Δura3ΔtfbD_temp-25C_od-0.874_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:vector in Δura3ΔtfbD knockout at 25C OD600= 0.874 Halobacterium NRC-1 Reference sample title:vector/Δura3ΔtfbD_temp-25C_od-0.874_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring control plasmid grown in CM at 25C until OD600= 0.874 vs NRC-1
14 GSM775835 vector/Δura3ΔtfbD_temp-25C_od-0.437_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:vector in Δura3ΔtfbD knockout at 25C OD600= 0.437 Halobacterium NRC-1 Reference sample title:vector/Δura3ΔtfbD_temp-25C_od-0.437_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring control plasmid grown in CM at 25C until OD600= 0.437 vs NRC-1
15 GSM775834 vector/Δura3ΔtfbD_temp-25C_od-0.212_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:vector in Δura3ΔtfbD knockout at 25C OD600= 0.212 Halobacterium NRC-1 Reference sample title:vector/Δura3ΔtfbD_temp-25C_od-0.212_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring control plasmid grown in CM at 25C until OD600= 0.212 vs NRC-1
16 GSM315918 V4 389,479 CMBI 2008-08-29 [Tiling Array] Lactococcus lactis pangenome 385K short oligo array (GPL7231) genomic Lactococcus lactis subsp. cremoris
Lactococcus lactis subsp. cremoris		 unclassified source_name:V4 title:V4 description:V4 is a L.lactis subsp. cremoris strain isolated from dairy products.
17 GSM317230 UC317 389,479 CMBI 2008-09-01 [Tiling Array] Lactococcus lactis pangenome 385K short oligo array (GPL7231) genomic Lactococcus lactis subsp. lactis
Lactococcus lactis subsp. lactis		 unclassified source_name:UC317 title:UC317 description:UC317 is a L.lactis subsp. lactis strain isolated from dairy products.
18 GSM768561 TSB_R5 transcriptome profile SVR 409,807 The Forsyth Institute 2011-07-28 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 unclassified source_name:Laboratory culture in TSB medium title:TSB_R5 transcriptome profile SVR
19 GSM768560 TSB_R4 transcriptome profile SVR 409,807 The Forsyth Institute 2011-07-28 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 unclassified source_name:Laboratory culture in TSB medium title:TSB_R4 transcriptome profile SVR
20 GSM768558 TSB_R2 transcriptome profile SVR 409,807 The Forsyth Institute 2011-07-28 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 unclassified source_name:Laboratory culture in TSB medium title:TSB_R2 transcriptome profile SVR
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