Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,463)		   Tiling Array
(684)		   cDNA Array
(10,536)		   Oligo Array
(19,945)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(877)		   Other
(57)		   All
(39,613)		  
  brain
(0)		   blood
(26)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(6)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(652)		   all
(684)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM635865 BAPHK_cDNA1 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
2 GSM635866 BAPHK_cDNA2 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
3 GSM635883 BAPHK_cDNA3 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
4 GSM635902 BAPHK_R15 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
5 GSM635903 BAPHK_R16 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
6 GSM636914 cDNA_DNAref1 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
7 GSM636915 cDNA_DNAref2 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
8 GSM636916 cDNA_DNAref3 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
9 GSM636917 RNA_DNAref1 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
10 GSM636918 RNA_DNAref2 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
11 GSM768217 BAPHK_R15 transcriptome profile SVR 409,807 The Forsyth Institute 2011-07-27 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
12 GSM768219 BAPHK_R16 transcriptome profile SVR 409,807 The Forsyth Institute 2011-07-27 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
13 GSM1032683 MM901 formate-excess(380 mM sodium formate) P-limiting(0.08 mM K2HPO4) rep1 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) P-limiting(0.08 mM K2HPO4) rep1
14 GSM1032684 MM901 formate-excess(380 mM sodium formate) P-limiting(0.08 mM K2HPO4) rep2 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) P-limiting(0.08 mM K2HPO4) rep2
15 GSM1032685 MM901 formate-excess(380 mM sodium formate) N-limiting(2 mM NH4Cl) rep1 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) N-limiting(2 mM NH4Cl) rep1
16 GSM1032686 MM901 formate-excess(380 mM sodium formate) N-limiting(2 mM NH4Cl) rep2 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) N-limiting(2 mM NH4Cl) rep2
17 GSM1032687 MM901 formate-excess(380 mM sodium formate) P-excess(0.8 mM K2HPO4) N-excess(NH4Cl) rep1 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) P-excess(0.8 mM K2HPO4) N-excess(NH4Cl) rep1
18 GSM1032688 MM901 formate-excess(380 mM sodium formate) P-excess(0.8 mM K2HPO4) N-excess(NH4Cl) rep2 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) P-excess(0.8 mM K2HPO4) N-excess(NH4Cl) rep2
19 GSM161578 L. helveticus CNRZ32 MRS1.1 95,368 UW-Madison 2007-02-10 [Tiling Array] NimbleGen Lactobacillus helveticus CNRZ32 169/tiling (GPL4817) RNA Lactobacillus helveticus
Lactobacillus helveticus		 lymphnode References: 1. Ulijasz, A.T., D. R. Andes, J. D. Glasner, B. Weisblum. 2004. Regulation of iron transport in Streptococcus pneumoniae by RitR, an orphan response regulator. J. Bacteriol. 186:8123-8136. 2. Bolstad, B. M., R. A. Irizarry, M. Astrand, and T. P. Speed. 2003. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 19:185-193.
20 GSM161580 L. helveticus CNRZ32 MRS1.2 95,368 UW-Madison 2007-02-10 [Tiling Array] NimbleGen Lactobacillus helveticus CNRZ32 169/tiling (GPL4817) RNA Lactobacillus helveticus
Lactobacillus helveticus		 lymphnode References: 1. Ulijasz, A.T., D. R. Andes, J. D. Glasner, B. Weisblum. 2004. Regulation of iron transport in Streptococcus pneumoniae by RitR, an orphan response regulator. J. Bacteriol. 186:8123-8136. 2. Bolstad, B. M., R. A. Irizarry, M. Astrand, and T. P. Speed. 2003. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 19:185-193.
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