Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(375)
  Primates
(0)
  Rodents
(326)
  Mammals
(28)
  Vertebrates
(18)
  Invertebrates
(49)
  Plants
(116)
  Bacteria
(60)
  Viruses
(0)
  Phages
(0)
  Unclassified
(5)
  All
(978)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(6)
  Tiling Array
(0)
  cDNA Array
(9)
  Oligo Array
(42)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(3)
  Other
(0)
  All
(60)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Oenococcus oeni CGH 11strains vs AWRIB515 (GSE16736) [Oligo Array] AWRI_Oenoccocus_oeni_105kv1.0_016965 (GPL8742) The Australian Wine Research Institute 2009-06-21 Oenococcus oeni
Oenococcus oeni
783,310
(71,210 x 11)
11 by_platform
by_series
2 Transcriptomic comparison of serotype M1 S. pyogenes (GSE35568) [Oligo Array] JCVI PFGRC Streptococcus pyogenes 21K v2 array designed primarily based on strain MGAS5005 (GPL10822) University of Queensland 2012-02-06 Streptococcus pyogenes
Streptococcus pyogenes
358,020
(9,945 x 36)
36 by_platform
by_series
3 The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5 (GSE29322) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-05-16 Pseudomonas fluorescens
Pseudomonas fluorescens
331,776
(27,648 x 12)
12 by_platform
by_series
4 Tannic acid treatment effect on transcriptome of Pseudomonas fluorescens Pf-5 (GSE33909) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-11-23 Pseudomonas fluorescens
Pseudomonas fluorescens
331,776
(27,648 x 12)
12 by_platform
by_series
5 Microarray analysis of phosphate regulation in Synechococcus sp. WH8102 (GSE13170) [Oligo Array] JCVI Synechococcus sp. WH 8102 19K v2.0 (GPL7449) Macquarie University 2008-10-13 Synechococcus sp. WH 8102
Synechococcus sp. WH 8102
307,200
(19,200 x 16)
4 12 by_platform
by_series
6 Gene expression response to copper toxicity between coastal and open ocean strains of marine Synechococcus (GSE13910) [Oligo Array] JCVI Synechococcus sp. CC9311 21k v1.0 (GPL7622) Macquarie University 2008-12-11 Synechococcus sp. CC9311
Synechococcus sp. CC9311
295,680
(21,120 x 14)
14 by_platform
by_series
7 PatE in transcriptional activation of acid-resistance pathways of enterohemorrhagic Escherichia coli strain EDL933 (GSE36922) [Oligo Array] Agilent-020666 EHEC_EDL933_O157_H7_Antisense (GPL15383) Walter and Eliza Hall Institute 2012-03-29 Escherichia coli O157:H7 str. EDL933
Escherichia coli O157:H7 str. EDL933
251,904
(15,744 x 16)
16 by_platform
by_series
8 Genome-wide Analysis of the Pho Regulon in a pstCA mutant of Citrobacter rodentium (GSE40906) [Oligo Array] WEHI_Citrobacterrodentium_15k_V1.0 (GPL7345) Walter and Eliza Hall Institute 2012-09-14 Citrobacter rodentium
Citrobacter rodentium
251,904
(15,744 x 16)
16 by_platform
by_series
9 Gene expression response to copper toxicity between coastal and open ocean strains of marine Synechococcus (GSE13910) [Oligo Array] JCVI Synechococcus sp. WH 8102 19K v2.0 (GPL7449) Macquarie University 2008-12-11 Synechococcus sp. WH 8102
Synechococcus sp. WH 8102
192,000
(19,200 x 10)
2 8 by_platform
by_series
10 The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5: iron(II) chloride (GSE29319) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-05-16 Pseudomonas fluorescens
Pseudomonas fluorescens
165,888
(27,648 x 6)
6 by_platform
by_series
11 The effect of Iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5: iron(III) chloride (GSE29320) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-05-16 Pseudomonas fluorescens
Pseudomonas fluorescens
165,888
(27,648 x 6)
6 by_platform
by_series
12 The effect of zinc limitation on transcriptome expression in Pseudomonas protegens Pf-5 (GSE32921) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-10-12 Pseudomonas fluorescens
Pseudomonas fluorescens
165,888
(27,648 x 6)
6 by_platform
by_series
13 Tannic acid (20 µg/ mL) treatment effect on transcriptome of Pseudomonas fluorescens Pf-5 (GSE33907) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-11-23 Pseudomonas fluorescens
Pseudomonas fluorescens
165,888
(27,648 x 6)
6 by_platform
by_series
14 Tannic acid (160 µg/ mL) treatment effect on transcriptome of Pseudomonas fluorescens Pf-5 (GSE33908) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-11-23 Pseudomonas fluorescens
Pseudomonas fluorescens
165,888
(27,648 x 6)
6 by_platform
by_series
15 JIR1201, JIR1212, JIR1244, JIR1461, JIR1474, JIR3209, JIR3350, JIR3356 and JIR3528 genomic arrays (GSE5157) [Oligo Array] Dichelobacter nodosus oligonucleotide microarray (GPL2981) Monash University 2006-06-26 Dichelobacter nodosus
Dichelobacter nodosus
134,784
(7,488 x 18)
18 by_platform
by_series
16 Microarray analysis of phosphate regulation in Synechococcus sp. WH8102 (GSE13170) [Oligo Array] JCVI Synechococcus sp. WH 8102 19K v1.0 (GPL7448) Macquarie University 2008-10-13 Synechococcus sp. WH 8102
Synechococcus sp. WH 8102
134,400
(19,200 x 7)
2 5 by_platform
by_series
17 Control of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA (GSE12876) [Oligo Array] WEHI_Citrobacterrodentium_15k_V1.0 (GPL7345) Walter and Eliza Hall Institute 2008-09-22 Citrobacter rodentium
Citrobacter rodentium
125,952
(15,744 x 8)
8 by_platform
by_series
18 The RegR virulence regulon of rabbit specific enteropathogenic Escherichia coli strain E22 (GSE41093) [Oligo Array] Agilent-034214 Ecoli E22 RegA ANTISENSE (GPL16094) Walter and Eliza Hall Institute 2012-09-24 Escherichia coli E22
Escherichia coli E22
125,952
(15,744 x 8)
8 by_platform
by_series
19 Gene expression in PAO1, clonal AES-1 and non-clonal isolates of Pseudomonas aeruginosa (GSE6122) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) University of Sydney 2006-10-24 Pseudomonas aeruginosa
Pseudomonas aeruginosa
106,200
(5,900 x 18)
18 by_platform
by_series
20 Transcriptional response of Leptospira interrogans to iron limitation and characterization of putative Fur-like protein (GSE20422) [Oligo Array] AGRF Leptospira interrogans spotted oligo array (GPL10072) Monash University 2010-02-19 Leptospira interrogans
Leptospira interrogans
101,376
(16,896 x 6)
6 by_platform
by_series
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