Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(971)
  Primates
(5)
  Rodents
(599)
  Mammals
(44)
  Vertebrates
(129)
  Invertebrates
(1,555)
  Plants
(229)
  Bacteria
(109)
  Viruses
(2)
  Phages
(2)
  Unclassified
(7)
  All
(3,654)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(15)
  Tiling Array
(0)
  cDNA Array
(37)
  Oligo Array
(51)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(4)
  Other
(2)
  All
(109)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Transcription of ectopic DNA in E.coli (GSE11051) [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) BC Cancer Agency 2008-04-03 Pseudomonas aeruginosa
Pseudomonas aeruginosa
3,391,530
(339,153 x 10)
10 by_platform
by_series
2 Desiccation and control transcriptomes of Rhodococcus jostii RHA1 (GSE10378) [Oligo Array] MERH03-S1-0002 (Rhodococcus sp. RHA1 22K) (GPL3918) University of British Columbia 2008-02-04 Rhodococcus jostii RHA1
Rhodococcus jostii RHA1
463,680
(22,080 x 21)
21 by_platform
by_series
3 Comparative genomic profiling of reference strains and selected Canadian field isolates of A. pleuropneumoniae (GSE14639) [cDNA Array] AppChip2 (NRC-IBS Actinobacillus pleuropneumoniae L20) (GPL6658) Université de Montréal - Faculté de Médecine Vétérinaire 2009-01-29 Actinobacillus pleuropneumoniae
Actinobacillus pleuropneumoniae
397,824
(5,376 x 74)
74 by_platform
by_series
4 CGH Analysis of C. jejuni isolates (GSE3579) [cDNA Array] CampyChip3 (GPL2681) National Research Council 2005-11-08 Campylobacter jejuni
Campylobacter jejuni
391,680
(4,608 x 85)
85 by_platform
by_series
5 Transcriptional analysis of E. coli whole genome during heat inactivation processes related to industrial cooking (GSE40557) [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) UNIVERSITE LAVAL 2012-09-03 Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655
283,392
(15,744 x 18)
18 by_platform
by_series
6 Genome Variation in the Symbiotic Nitrogen-Fixing Bacterium Sinorhizobium meliloti (GSE15889) [Oligo Array] sm6koligo (GPL8499) MCMASTER UNIVERSITY 2009-04-29 Sinorhizobium meliloti
Sinorhizobium meliloti
282,240
(20,160 x 14)
14 by_platform
by_series
7 Genomic comparison of M. tuberculosis (Mtb) clinical isolates of the Beijing family and clinical isolate HN878 dosR::hyg derivatives versus Mtb laboratory strain H37Rv ATCC27294 (GSE20917) [Oligo Array] McGill/Behr lab_M. tuberculosis_10K_v1.0 (GPL8893) Research Institute of McGill University Health Centre 2010-03-16 Mycobacterium tuberculosis
Mycobacterium tuberculosis
262,080
(10,080 x 26)
26 by_platform
by_series
8 ChIP-chip of HA-tagged Lsr2 in Mycobacterium tuberculosis and Mycobacterium smegmatis (GSE18652) [Oligo Array] Mycobacterium smegmatis MC2 155 241K Whole Genome Tilling Array (GPL9468) University of Toronto 2009-10-20 Mycobacterium smegmatis
Mycobacterium smegmatis
240,971
(240,971 x 1)
1 by_platform
by_series
9 ChIP-chip of HA-tagged Lsr2 in Mycobacterium tuberculosis and Mycobacterium smegmatis (GSE18652) [Oligo Array] Mycobacterium tuberculosis H37Rv 241K Whole Genome Tilling Array (GPL9467) University of Toronto 2009-10-20 Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
240,851
(240,851 x 1)
1 by_platform
by_series
10 Evolution of gene expression during an adaptive diversification event (GSE8965) [Oligo Array] Escherichia coli 6k oligo microarray (GPL5767) University of British Columbia 2007-09-05 Escherichia coli
Escherichia coli
239,600
(5,990 x 40)
40 by_platform
by_series
11 Desiccation and control transcriptomes of Rhodococcus jostii RHA1 (GSE10378) [Oligo Array] MERH03-S1-0003 (Rhodococcus sp. RHA1 11K) (GPL6703) University of British Columbia 2008-02-04 Rhodococcus jostii RHA1
Rhodococcus jostii RHA1
235,872
(11,232 x 21)
21 by_platform
by_series
12 CGH analysis of Campylobacter jejuni isolates previously analyzed by Multi-Locus Sequence Typing (GSE9919) [cDNA Array] CampyChip3 (GPL2681) Public Health Agency of Canada 2007-12-17 Campylobacter jejuni
Campylobacter jejuni
207,360
(4,608 x 45)
45 by_platform
by_series
13 Genome and transcriptome divergence in Bacillus subtilis after 6,000 generations of evolution (GSE4469) [cDNA Array] Eurogentec Bacillus subtilis microarray (GPL3502) University of British Columbia 2006-03-14 Bacillus subtilis
Bacillus subtilis
202,752
(9,216 x 22)
22 by_platform
by_series
14 Effect of biphenyl, ethylbenzene, and benzoate on Rhodococcus sp. RHA1 (GSE5280) [Oligo Array] MERH03-S1-0002 (Rhodococcus sp. RHA1 22K) (GPL3918) University of British Columbia 2006-07-10 Rhodococcus jostii RHA1
Rhodococcus jostii RHA1
198,720
(22,080 x 9)
9 by_platform
by_series
15 Genomics-based molecular epidemiology of human clinical and feedlot cattle C. jejuni isolates in Alberta, Canada (GSE13228) [Oligo Array] BMGC Campylobacter jejuni NCTC 11168 condensed oligo array v.1.0 (GPL7429) Public Health Agency of Canada 2008-10-16 Campylobacter jejuni
Campylobacter jejuni
183,974
(1,546 x 119)
119 by_platform
by_series
16 Expression data from E. coli O157:H7 growth in the absence or presence of HEp-2 epithelial cells (GSE14238) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) Hospital for Sick Children 2008-12-30 Escherichia coli O157:H7
Escherichia coli O157:H7
183,744
(10,208 x 18)
5 13 by_platform
by_series
17 Microarray-based comparative genomic profiling of reference strains of Actinobacillus pleuropneumoniae (GSE11921) [cDNA Array] AppChip2 (NRC-IBS Actinobacillus pleuropneumoniae L20) (GPL6658) National Research Council 2008-06-27 Actinobacillus pleuropneumoniae
Actinobacillus pleuropneumoniae
177,408
(5,376 x 33)
33 by_platform
by_series
18 ChIP-chip profiling of SsrB in Salmonella enterica sv. Typhimurium (GSE20192) [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) McMaster University 2010-02-04 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
173,808
(43,452 x 4)
4 by_platform
by_series
19 Analysis of SCOTS effect on transcript population (GSE3095) [cDNA Array] STv4_MMCC (GPL548) University of Montreal 2005-08-09 Salmonella enterica subsp. enterica serovar Typhi
Salmonella enterica subsp. enterica serovar Typhi
138,624
(5,776 x 24)
24 by_platform
by_series
20 Expression profiles of Salmonella typhi inside human macrophages (THP-1) compared to supernatant (GSE3096) [cDNA Array] STv4_MMCC (GPL548) University of Montreal 2005-08-09 Salmonella enterica subsp. enterica serovar Typhi
Salmonella enterica subsp. enterica serovar Typhi
138,624
(5,776 x 24)
24 by_platform
by_series
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