Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(146)		   Primates
(0)		   Rodents
(32)		   Mammals
(0)		   Vertebrates
(1)		   Invertebrates
(8)		   Plants
(9)		   Bacteria
(16)		   Viruses
(0)		   Phages
(0)		   Unclassified
(0)		   All
(212)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(1)		   Tiling Array
(0)		   cDNA Array
(0)		   Oligo Array
(15)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(16)		  
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Comparative genomic hybridization analysis shows different epidemiology of chromosomal and plasmid-borne cpe-carrying Clostridium perfringens type A strains (GSE30954) [Oligo Array] Agilent-019584 Clostridium perfringens 15K (GPL13971) University of Helsinki 2011-07-26 Clostridium perfringens
Clostridium perfringens		 2,566,272
(15,744 x 163) 		163 by_platform
by_series
2 Microarray-based species identification of Streptomyces spp. isolated from potato scab lesions in Norway (GSE20487) [Oligo Array] Agilent Potato bacteria scabturg 15K array (GPL10095) University of Helsinki 2010-02-23 Streptomyces scabiei
Streptomyces scabiei		 976,128
(15,744 x 62) 		62 by_platform
by_series
3 Analysis of σL dependent traits based on phenotypic and transcriptomic evaluation of the Listeria monocytogenes EGDe strain (GSE32434) [Oligo Array] Agilent-015757 Listeria monocytogenes array (GPL14631) University of Helsinki 2011-09-28 Listeria monocytogenes EGD-e
Listeria monocytogenes EGD-e		 566,784
(15,744 x 36) 		36 by_platform
by_series
4 Differences in the genomic content of Bordetella pertussis strains before and after vaccine introduction in European countries (GSE29579) [Oligo Array] Finnish Bordetella pertussis Oligoarray v.1 (GPL5378) National Institute for Health and Welfare 2011-05-27 Bordetella pertussis
Bordetella pertussis		 224,576
(7,744 x 29) 		29 by_platform
by_series
5 Comparative Genomics of Bordetella pertussis Reveals Progressive Gene Loss in Finnish Strains (GSE8092) [Oligo Array] Finnish Bordetella pertussis Oligoarray v.1 (GPL5378) National Institute for Health and Welfare 2007-06-12 Bordetella pertussis
Bordetella pertussis		 201,344
(7,744 x 26) 		26 by_platform
by_series
6 Growth phase-associated changes in Lactobacillus rhamnosus GG (GSE28903) [Oligo Array] Lactobacillus rhamnosus GG whole genome microarray 4X44K (GPL10580) Valio Ltd 2011-04-28 Lactobacillus rhamnosus GG
Lactobacillus rhamnosus GG		 184,668
(2,798 x 66) 		66 by_platform
by_series
7 Comparison of genetic differences between Streptomyces scabies and turgidiscabies strains (GSE18665) [Oligo Array] Streptomyces scabiei (potato bacteria) 15758 oligo array (GPL9473) University of Helsinki 2009-10-21 Streptomyces scabiei
Streptomyces scabiei		 108,864
(4,032 x 27) 		27 by_platform
by_series
8 Gene expression analysis of wild type Pectobacterium wasabie SCC3193 compared to a SCC3193 inactivation mutant of rsmA (GSE40333) [Oligo Array] Agilent-025620 wasabiearray1 (GPL15986) University of Helsinki 2012-08-23 Pectobacterium wasabiae
Pectobacterium wasabiae		 94,464
(15,744 x 6) 		6 by_platform
by_series
9 Transcriptional profiling of Campylobacter jejuni wild-type 81-176 and its ciprofloxacin-resistant derivative (P3) in the presence and absence of ciprofloxacin (GSE41822) [Oligo Array] Agilent-033077 Campylobacter jejuni expression array HY_81176 (Agilent Probe Name version) (GPL16214) University of Helsinki 2012-10-24 Campylobacter jejuni subsp. jejuni 81-176
Campylobacter jejuni subsp. jejuni 81-176		 84,288
(5,268 x 16) 		16 by_platform
by_series
10 Heme-based respiration of Leuconostoc gasicomitatum (GSE41281) [Oligo Array] Agilent-022099 Custom Leuconostoc gasicomitatum LMG 18811 oligoarray 2.1 (GPL16127) University of helsinki 2012-10-02 Leuconostoc gasicomitatum LMG 18811
Leuconostoc gasicomitatum LMG 18811		 73,832
(9,229 x 8) 		8 by_platform
by_series
11 The two-component system Cbo0366/Cbo0365 plays a central role in the cold shock response of Group I (proteolytic) Clostridium botulinum ATCC 3502 (GSE26587) [Oligo Array] Agilent 16K botuarray (GPL11441) University of Helsinki 2011-01-12 Clostridium botulinum
Clostridium botulinum		 47,232
(15,744 x 3) 		3 by_platform
by_series
12 Oxygen downshift experiment with E.coli W3110 (GSE12006) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) University of Oulu 2008-07-04 Escherichia coli
Escherichia coli		 40,832
(10,208 x 4) 		4 by_platform
by_series
13 Bile stress response in probiotic Lactobacillus rhamnosus GG (GSE22536) [Oligo Array] Lactobacillus rhamnosus GG whole genome microarray 4X44K (GPL10580) Valio Ltd 2010-06-23 Lactobacillus rhamnosus
Lactobacillus rhamnosus		 33,576
(2,798 x 12) 		12 by_platform
by_series
14 Pectobacterium atrosepticum host extract induced gene expression study (GSE11548) [Oligo Array] Pectobacterium atrosepticum 4.5K Eca4444Array (GPL6894) University of Helsinki 2008-05-23 Pectobacterium atrosepticum
Pectobacterium atrosepticum		 26,664
(4,444 x 6) 		6 by_platform
by_series
15 Comparison of genetic differences between Streptomyces scabies and turgidiscabies strains (GSE18665) [Oligo Array] Streptomyces scabiei (potato bacteria) 19585 oligo array (GPL9474) University of Helsinki 2009-10-21 Streptomyces reticuliscabiei
Streptomyces reticuliscabiei		 4,032
(4,032 x 1) 		1 by_platform
by_series
16 Gene expression of Streptomyces turgidiscabies pathogenicity island (GSE18375) [Oligo Array] Potato bacteria 19586 pathogenicity island array (GPL9345) University of Helsinki 2009-10-02 Streptomyces turgidiscabies
Streptomyces turgidiscabies		 3,384
(282 x 12) 		12 by_platform
by_series
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