Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(9,415)		   Primates
(146)		   Rodents
(6,860)		   Mammals
(282)		   Vertebrates
(526)		   Invertebrates
(1,776)		   Plants
(2,898)		   Bacteria
(1,674)		   Viruses
(30)		   Phages
(1)		   Unclassified
(143)		   All
(23,779)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(396)		   Tiling Array
(53)		   cDNA Array
(446)		   Oligo Array
(704)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(5)		   HT-Seq
(65)		   Other
(5)		   All
(1,674)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Analysis of the Haloferax volcanii Transcriptome (GSE18066) [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) The Ohio State Uinversity 2009-09-10 Haloferax volcanii
Haloferax volcanii		 15,836,576
(259,616 x 61) 		1 60 by_platform
by_series
2 Halobacterium salinarum NRC-1 growth curve, tiling arrays (GSE12923) [Tiling Array] Halobacterium tiling array Agilent 015962 (GPL7255) Institute for Systems Biology 2008-09-24 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 12,905,712
(243,504 x 53) 		53 by_platform
by_series
3 Prevalence of transcription promoters within archaeal operons and coding sequences (GSE13150) [Tiling Array] Halobacterium tiling array Agilent 015962 (GPL7255) Institute for Systems Biology 2008-10-10 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 12,905,712
(243,504 x 53) 		53 by_platform
by_series
4 Mapping the DNA-binding response regulators of Desulfovibrio vulgaris Hildenborough (GSE25163) [Tiling Array] NimbleGen Desulfovibrio vulgaris 385k array (GPL11167) Lawrence Berkeley Lab 2010-11-05 Desulfovibrio vulgaris
Desulfovibrio vulgaris		 12,480,380
(367,070 x 34) 		34 by_platform
by_series
5 Comparative genomic hybridization study of Streptococcus pneumoniae (GSE29501) [Oligo Array] Agilent-031422 S_pneumoniae_CGH (GPL13281) J Craig Venter Institute 2011-05-24 Streptococcus pneumoniae,Streptococcus pneumoniae TIGR4
Streptococcus pneumoniae,Streptococcus pneumoniae TIGR4		 11,531,100
(45,220 x 255) 		255 by_platform
by_series
6 Comparative genomic hybridization study of Neisseria meningitidis (GSE30813) [Oligo Array] Agilent-032741 Neisseria_CGH (GPL13375) J Craig Venter Institute 2011-07-20 Neisseria meningitidis
Neisseria meningitidis		 11,305,000
(45,220 x 250) 		250 by_platform
by_series
7 Transcript map of Shewanella oneidensis MR-1 (GSE45217) [Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797) University of California 2013-03-15 Shewanella oneidensis MR-1
Shewanella oneidensis MR-1		 10,118,180
(2,023,636 x 5) 		5 by_platform
by_series
8 Analysis of Geobacter sulfurreducens under multiple growth conditions (GSE22512) [Tiling Array] UCSD Nimblegen Geobacter sulfurreducens 381K Tiling Array 2007 (Probe) (GPL9112) UCSD 2010-06-22 Geobacter sulfurreducens PCA
Geobacter sulfurreducens PCA		 9,910,524
(381,174 x 26) 		26 by_platform
by_series
9 Rho and NusG suppress pervasive antisense transcription in Escherichia coli (GSE41940) [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) UW-Madison 2012-10-31 Escherichia coli K-12
Escherichia coli K-12		 9,834,188
(378,238 x 26) 		26 by_platform
by_series
10 Novel gene discovery in up to 10 ETEC strains and production of species microarray. Discovery of conserved and unique ETEC genes by comparative genome hybridization studies. (GSE25601) [Oligo Array] Agilent-029784 ETEC_CGH (GPL10979) J Craig Venter Institute 2010-11-24 Escherichia coli
Escherichia coli		 9,767,520
(45,220 x 216) 		216 by_platform
by_series
11 ChIP-chip of Geobacter sulfurreducens PCA with antibody against RNAP and RpoD under various conditions (GSE22503) [Tiling Array] UCSD Nimblegen Geobacter sulfurreducens 381K Tiling Array 2007 (Probe) (GPL9112) UCSD 2010-06-22 Geobacter sulfurreducens PCA
Geobacter sulfurreducens PCA		 8,004,654
(381,174 x 21) 		21 by_platform
by_series
12 Strand-specific transcriptome profiling with directly labeled RNA on genomic tiling microarrays (GSE25876) [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) The Forsyth Institute 2010-12-06 Porphyromonas gingivalis
Porphyromonas gingivalis		 7,376,526
(409,807 x 18) 		12 6 by_platform
by_series
13 Comparative Genomics Study of Clostridium botulinum (GSE19107) [Oligo Array] Agilent-022589 Clostridium_botulinum_species_cgh_array 022588 (GPL9104) J Craig Venter Institute 2009-11-19 Clostridium botulinum
Clostridium botulinum		 7,054,320
(45,220 x 156) 		2 154 by_platform
by_series
14 Identification of new genomic areas within the genomes of Yersinia pestis and Yersinia pseudotuberculosis strains through targeted genome sequencing (GSE23797) [Oligo Array] Agilent-024504 Yersinia_CGH_20090707 (GPL10805) J Craig Venter Institute 2010-08-25 Yersinia pestis
Yersinia pestis		 7,054,320
(45,220 x 156) 		156 by_platform
by_series
15 Probing the pan genome of a foodborne bacterial pathogen Listeria monocytogenes (GSE20367) [Tiling Array] CBCB Listeria monocytogenes 385K v1.0 (GPL8942) Illinois Insititute of Technology 2010-02-17 Listeria monocytogenes
Listeria monocytogenes		 6,930,000
(385,000 x 18) 		18 by_platform
by_series
16 Regulator trafficking on bacterial transcription units in vivo (GSE13938) [Tiling Array] Escherichia coli K-12 MG1655 tiling array (Nimblegen Design) (GPL7790) University of Wisconsin-Madison 2008-12-13 Escherichia coli
Escherichia coli		 6,364,936
(374,408 x 17) 		17 by_platform
by_series
17 Genome-wide gene expression and identification of RNA polymerase, RpoD, and RpoS binding sites in Klebsiella pneumoniae MGH 78578 (GSE36055) [Oligo Array] Klebsiella pneumoniae MGH 78578 Nimblegen 9822 array (GPL15252) University of California, San Diego 2012-02-23 Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Klebsiella pneumoniae subsp. pneumoniae MGH 78578		 5,692,920
(379,528 x 15) 		15 by_platform
by_series
18 Rho and NusG suppress pervasive antisense transcription in Escherichia coli [tiling array]. (GSE41938) [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) UW-Madison 2012-10-31 Escherichia coli K-12
Escherichia coli K-12		 5,295,332
(378,238 x 14) 		14 by_platform
by_series
19 Comparative Genomics Study of Vibrio cholerae (GSE19108) [Oligo Array] Agilent-022729 Vibrio_species_20090128 (GPL9105) J Craig Venter Institute 2009-11-19 Vibrio cholerae
Vibrio cholerae		 5,245,520
(45,220 x 116) 		116 by_platform
by_series
20 Transcriptome analysis of E.coli MG1655 under multiple growth conditions (GSE15534) [Tiling Array] UCSD, NimbleGen_E_coli_MG1655_371K Tiling_Array_2005 (GPL8387) UCSD 2009-04-03 Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 5,194,476
(371,034 x 14) 		14 by_platform
by_series
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