Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(71)		   Primates
(1)		   Rodents
(53)		   Mammals
(6)		   Vertebrates
(9)		   Invertebrates
(20)		   Plants
(71)		   Bacteria
(29)		   Viruses
(1)		   Phages
(2)		   Unclassified
(1)		   All
(264)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(0)		   cDNA Array
(24)		   Oligo Array
(4)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(1)		   All
(29)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL2620 ScoKao_03-05-20 11,520 Stanford Microarray Database (SMD) 2005-07-11 Tina,,Boussard; School of Medicine, Department of Genetics, Stanford, CA, United States, 94305; 650-736-0077; boussard@genome.stanford.edu Streptomyces coelicolor
Streptomyces coelicolor		 cDNA Array spotted DNA/cDNA, ScoKao_03-05-20,
2 GPL2697 Rhodopseudomonas palustris whole genome microarray 11,520 University of Washington 2005-07-28 Environmental Sciences Division, Oak Ridge National Laboratory Rhodopseudomonas palustris
Rhodopseudomonas palustris		 cDNA Array spotted DNA/cDNA, Rhodopseudomonas palustris whole genome microarray,
3 GPL2619 ScoKao_02-08-14 10,368 Stanford Microarray Database (SMD) 2005-07-11 John,,Matese; Lewis-Sigler Institute for Integrative Genomics, Carl Icahn Laboratory, Room 135, Princeton, NJ, United States; (609) 258-8309; jcmatese@genomics.princeton.edu Streptomyces coelicolor
Streptomyces coelicolor		 cDNA Array spotted DNA/cDNA, ScoKao_02-08-14,
4 GPL2817 E. coli array print #3 9,600 University of California, Los Angeles 2005-09-07 Liao lab Escherichia coli
Escherichia coli		 cDNA Array spotted DNA/cDNA, E. coli array print #3,
5 GPL2848 UC Davis Singer Myxococcus xanthus 9.5K cDNA array 9,600 The University of California, Davis 2005-09-14 Stanford Myxococcus xanthus
Myxococcus xanthus		 cDNA Array spotted DNA/cDNA, UC Davis Singer Myxococcus xanthus 9.5K cDNA array,
6 GPL2818 E. coli array print #4 9,504 University of California, Los Angeles 2005-09-07 Liao lab Escherichia coli
Escherichia coli		 cDNA Array spotted DNA/cDNA, E. coli array print #4,
7 GPL2816 E. coli array print #2 8,664 University of California, Los Angeles 2005-09-07 Liao lab Escherichia coli
Escherichia coli		 cDNA Array spotted DNA/cDNA, E. coli array print #2,
8 GPL2815 E. coli array print #1 8,640 University of California, Los Angeles 2005-09-07 Liao lab Escherichia coli
Escherichia coli		 cDNA Array spotted DNA/cDNA, E. coli array print #1,
9 GPL2807 WUSTL Yersinia pestis 8.4k v.1 8,448 Washington Univeristy School of Medicine 2005-09-02 Washington University School of Medicine Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, WUSTL Yersinia pestis 8.4k v.1, To construct a gene-specific microarray of the Y. pestis genome, we designed 70mer oligonucleotide array elements. Predicted Y. pestis genes, encoded on both the chromosome and the three plasmids of strain CO92, were obtained from the The Wellcome Trust Sanger Institute (http://www.sanger.ac.uk/Projects/Y_pestis/). In addition genes derived from human, mouse, rat and virus were included to detect contaminating host mRNA. Oligonucleotides were designed from these sequences using ArrayOligoSelector.
10 GPL2772 STM062602 7,680 Stanford Microarray Database (SMD) 2005-08-23 Tina,,Boussard; School of Medicine, Department of Genetics, Stanford, CA, United States, 94305; 650-736-0077; boussard@genome.stanford.edu Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium		 cDNA Array spotted DNA/cDNA, STM062602,
11 GPL2755 ecoli_9.0 7,296 Stanford Microarray Database (SMD) 2005-08-12 Tina,,Boussard; School of Medicine, Department of Genetics, Stanford, CA, United States, 94305; 650-736-0077; boussard@genome.stanford.edu Escherichia coli
Escherichia coli		 cDNA Array spotted DNA/cDNA, ecoli_9.0,
12 GPL2833 ecoli_12 7,056 Stanford Microarray Database (SMD) 2005-09-09 Catherine,,Ball; Stanford University School of Medicine, Department of Genetics, CCSR Room 2255b, Stanford, CA, USA, 94305; 650-498-6012; ball@genome.stanford.edu Escherichia coli
Escherichia coli		 cDNA Array spotted DNA/cDNA, ecoli_12,
13 GPL2820 ecoli_10 7,040 Stanford Microarray Database (SMD) 2005-09-08 Tina,,Boussard; School of Medicine, Department of Genetics, Stanford, CA, United States, 94305; 650-736-0077; boussard@genome.stanford.edu Escherichia coli
Escherichia coli		 cDNA Array spotted DNA/cDNA, ecoli_10,
14 GPL2821 ECD1a-list1 6,144 Stanford Microarray Database (SMD) 2005-09-08 John,,Matese; Lewis-Sigler Institute for Integrative Genomics, Carl Icahn Laboratory, Room 135, Princeton, NJ, United States; (609) 258-8309; jcmatese@genomics.princeton.edu Escherichia coli
Escherichia coli		 cDNA Array spotted DNA/cDNA, ECD1a-list1,
15 GPL2742 VCholerae_A 5,760 Stanford Microarray Database (SMD) 2005-08-10 Tina,,Boussard; School of Medicine, Department of Genetics, Stanford, CA, United States, 94305; 650-736-0077; boussard@genome.stanford.edu Vibrio cholerae
Vibrio cholerae		 cDNA Array spotted DNA/cDNA, VCholerae_A,
16 GPL2787 TB-1 5,760 Stanford Microarray Database (SMD) 2005-08-25 John,,Matese; Lewis-Sigler Institute for Integrative Genomics, Carl Icahn Laboratory, Room 135, Princeton, NJ, United States; (609) 258-8309; jcmatese@genomics.princeton.edu Mycobacterium tuberculosis
Mycobacterium tuberculosis		 cDNA Array spotted DNA/cDNA, TB-1,
17 GPL2663 STREP-2 5,472 Stanford Microarray Database (SMD) 2005-07-22 John,,Matese; Lewis-Sigler Institute for Integrative Genomics, Carl Icahn Laboratory, Room 135, Princeton, NJ, United States; (609) 258-8309; jcmatese@genomics.princeton.edu Streptomyces coelicolor
Streptomyces coelicolor		 cDNA Array spotted DNA/cDNA, STREP-2,
18 GPL2781 HP_Hutcharray_6-03 4,992 Stanford Microarray Database (SMD) 2005-08-25 Jeremy,,Gollub; CCSR 2255, Stanford, California 94305; 650-736-0075; jgollub@genome.stanford.edu Helicobacter pylori
Helicobacter pylori		 cDNA Array spotted DNA/cDNA, HP_Hutcharray_6-03,
19 GPL2681 CampyChip3 4,608 National Research Council 2005-07-27 National Research Council, Canada Campylobacter jejuni
Campylobacter jejuni		 cDNA Array spotted DNA/cDNA, CampyChip3, Campylobacter jejuni microarray with 4608 spot features corresponding to 1600 of the 1634 ORFs of strain NCTC 11168, 181 ORFs from strain RM1221, 48 ORFs from the pVir plasmid of strain 81-176, and 32 ORFs from other strains. All genes are spotted in duplicate and sheared total genomic DNA from strain NCTC 11168 was used as a control. Blocks per chip:24 Columns per block:12 Rows per block:16
20 GPL2708 Xylella USP microarray v2 (Koide et al. 2004 J.Bact.) 4,608 Universidade de São Paulo 2005-07-31 Instituto de Química da Universidade de São Paulo (IQ-USP) Xylella fastidiosa
Xylella fastidiosa		 cDNA Array spotted DNA/cDNA, Xylella USP microarray v2 (Koide et al. 2004 J.Bact.),
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