Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(204)
  Primates
(0)
  Rodents
(191)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(50)
  Plants
(84)
  Bacteria
(0)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(632)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(6)
  Tiling Array
(1)
  cDNA Array
(32)
  Oligo Array
(35)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(0)
 
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Design of a 7 Genomes Escherichia coli Microarray for Comparative Genomic Profiling (GSE4690) [GeneChip] CBS - 7 genomes E. coli microarray (GPL3680) DTU 2006-04-20 Escherichia coli
Escherichia coli
3,803,702
(271,693 x 14)
14 by_platform
by_series
2 Halobacterium NRC-1 response to sub-lethal levels of Mn(II), Fe(II), Co(II), Ni(II), Cu(II) and Zn(II) (GSE4925) [Oligo Array] ISB Halobacterium Spotted Microarray (GPL3739) Institute for Systems Biology 2006-05-25 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1
1,612,800
(10,752 x 150)
150 by_platform
by_series
3 Mapping of hns sites in Typhimurium 14028 using a tiling oligo array (GSE4879) [Tiling Array] SKCC Salmonella 380K tiling array (GPL3786) Vaccine Research Institute of San Diego 2006-05-19 Salmonella
Salmonella
765,728
(382,864 x 2)
2 by_platform
by_series
4 Metabolite stress in Clostridium acetobutylicum ATCC 824 (GSE5020) [cDNA Array] NU C. acetobutylicum ATCC 824 13 K whole genome spotted cDNA array (GPL3820) University of Delaware 2006-06-07 Clostridium acetobutylicum
Clostridium acetobutylicum
691,968
(13,056 x 53)
53 by_platform
by_series
5 CGH analysis between Xcc strains and transcriptome analysis of Xcc 8004 grown in NYG and XVM2 (GSE5087) [cDNA Array] XCC 4.3K cDNA array (GPL3842) CapitalBio Corporation 2006-06-16 Xanthomonas campestris pv. campestris
Xanthomonas campestris pv. campestris
357,504
(12,768 x 28)
28 by_platform
by_series
6 Halobacterium NRC-1, ura3 Knockout, Metal Stress Response (GSE4898) [Oligo Array] ISB Halobacterium Spotted Microarray (GPL3739) Institute for Systems Biology 2006-05-23 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1
301,056
(10,752 x 28)
28 by_platform
by_series
7 Clostridium acetobutylicum ATCC 824 butanol stress (50 mM) (GSE5008) [cDNA Array] NU C. acetobutylicum ATCC 824 13 K whole genome spotted cDNA array (GPL3820) University of Delaware 2006-06-06 Clostridium acetobutylicum
Clostridium acetobutylicum
287,232
(13,056 x 22)
22 by_platform
by_series
8 Halobacterium NRC-1, FeSO4.7H2O Time Series (GSE4894) [Oligo Array] ISB Halobacterium Spotted Microarray (GPL3739) Institute for Systems Biology 2006-05-22 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1
236,544
(10,752 x 22)
22 by_platform
by_series
9 Clostridium acetobutylicum ATCC 824 acetate stress (43 mM) (GSE5009) [cDNA Array] NU C. acetobutylicum ATCC 824 13 K whole genome spotted cDNA array (GPL3820) University of Delaware 2006-06-06 Clostridium acetobutylicum
Clostridium acetobutylicum
221,952
(13,056 x 17)
17 by_platform
by_series
10 Effect of heat shock at 500 atm and pressure shock to 500 atm on Methanocaldococcus jannaschii (GSE4620) [cDNA Array] UCB Methanocaldococcus jannaschii 7K v1.0 (GPL3565) UC Berkeley 2006-04-05 Methanocaldococcus jannaschii
Methanocaldococcus jannaschii
211,200
(7,040 x 30)
30 by_platform
by_series
11 Clostridium acetobutylicum ATCC 824 butyrate stress (29 mM) (GSE4992) [cDNA Array] NU C. acetobutylicum ATCC 824 13 K whole genome spotted cDNA array (GPL3820) University of Delaware 2006-06-06 Clostridium acetobutylicum
Clostridium acetobutylicum
182,784
(13,056 x 14)
14 by_platform
by_series
12 Halobacterium NRC-1, ura3 Knockout, sirR Knockout, MnSO4.H2O Stress Response (GSE4899) [Oligo Array] ISB Halobacterium Spotted Microarray (GPL3739) Institute for Systems Biology 2006-05-23 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1
172,032
(10,752 x 16)
16 by_platform
by_series
13 Halobacterium NRC-1, ura3 Knockout, vng1179 Knockout, Cu Stress Response (GSE4900) [Oligo Array] ISB Halobacterium Spotted Microarray (GPL3739) Institute for Systems Biology 2006-05-23 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1
172,032
(10,752 x 16)
16 by_platform
by_series
14 B.thetaiotaomicron wt versus KO3172, PR chow, NMRI (GSE4703) [GeneChip] bthetaa511044F (GPL1821) Washington University 2006-04-22 Bacteroides thetaiotaomicron
Bacteroides thetaiotaomicron
151,823
(6,601 x 23)
15 8 by_platform
by_series
15 Acid-Shifted Time Course of Gene Expression Profiles of Aerobically Grown Escherichia coli K-12 (GSE4778) [GeneChip] [Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array (GPL199) Kenyon College 2006-05-05 Escherichia coli
Escherichia coli
146,240
(7,312 x 20)
20 by_platform
by_series
16 Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests (GSE4877) [cDNA Array] VCholerae_A (GPL2742) Stanford Microarray Database (SMD) 2006-05-19 Vibrio cholerae
Vibrio cholerae
138,240
(5,760 x 24)
24 by_platform
by_series
17 JIR1201, JIR1212, JIR1244, JIR1461, JIR1474, JIR3209, JIR3350, JIR3356 and JIR3528 genomic arrays (GSE5157) [Oligo Array] Dichelobacter nodosus oligonucleotide microarray (GPL2981) Monash University 2006-06-26 Dichelobacter nodosus
Dichelobacter nodosus
134,784
(7,488 x 18)
18 by_platform
by_series
18 Mga regulon (GSE4599) [Oligo Array] M1, M3, M18 GAS Array (GPL1482) University of Maryland, College Park 2006-04-03 Streptococcus pyogenes
Streptococcus pyogenes
132,192
(7,344 x 18)
18 by_platform
by_series
19 Effect of ppGpp on Salmonella Typhimurium gene expression (GSE4631) [cDNA Array] Institute of Food Research Salmonella typhimurium LT2 5.8K array (GPL3612) Institute of Food Research 2006-04-07 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
129,024
(5,376 x 24)
24 by_platform
by_series
20 Expression analysis of hns mutant Salmonella (GSE4931) [cDNA Array] STv5B_MMCC (GPL1835) University of Washington 2006-05-25 Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
103,968
(5,776 x 18)
18 by_platform
by_series