Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(124)		   Primates
(2)		   Rodents
(90)		   Mammals
(10)		   Vertebrates
(20)		   Invertebrates
(37)		   Plants
(65)		   Bacteria
(66)		   Viruses
(17)		   Phages
(0)		   Unclassified
(14)		   All
(447)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(4)		   Tiling Array
(2)		   cDNA Array
(5)		   Oligo Array
(47)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(7)		   Other
(1)		   All
(66)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9409 Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling 385,673 KULeuven 2009-10-08 Nimblegen Rhizobium etli CFN 42
Rhizobium etli CFN 42		 Tiling Array in situ oligonucleotide, Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling, Whole genome expression tiling array for Rhizobium etli CFN42, representing the forward strand of the chromosome and all 6 plasmids (NC_007761, NC007762, NC_007763, NC_007764, NC_004041, NC_007765, NC_007766), included repeat regions, 60mers, Ctrl (RNA) probes replicated 50 times, ERCC probes replicated 6 times, probe interval 13bp
2 GPL9490 081118_Sims_GIS_multi_Burkh_cgh 366,064 GENOME INSTITUTE OF SINGAPORE 2009-10-27 NimbleGen Burkholderiales
Burkholderiales		 Oligo Array in situ oligonucleotide, 081118_Sims_GIS_multi_Burkh_cgh, Using the NimbleGen proprietary photolithography Maskless Array Synthesizer (MAS) technology in situ oligo-synthesis, we fabricated a multi-species pan genome array that has 388943 probes, of which 366064 are data probes, 2074 control probes and 20,000 probes for backgroun estimation and correction. The make-up of these data probes are 55% (of which 60% from Bp K96243) for all sequenced Bp strains, 34% designed for all sequenced Bt strains (of which 90% from Bt E264) and finally 11% designed for Bc strain J2315. The pan genome array has an average melting temperature of 83degC and has a range from 65.4degC to 97.3degC. The average probe length is 50bp, with an average spacing of 60 to 62 bp after removing all repetition and homo-polymer runs. native array description file: 081118_Sims_GIS_multi_Burkh_cgh.ndf native array description file: 081118_Sims_GIS_multi_Burkh_cgh.pos
3 GPL9468 Mycobacterium smegmatis MC2 155 241K Whole Genome Tilling Array 240,971 University of Toronto 2009-10-20 Agilent Technologies Mycobacterium smegmatis str. MC2 155
Mycobacterium smegmatis str. MC2 155		 Oligo Array in situ oligonucleotide, Mycobacterium smegmatis MC2 155 241K Whole Genome Tilling Array,
4 GPL9467 Mycobacterium tuberculosis H37Rv 241K Whole Genome Tilling Array 240,851 University of Toronto 2009-10-20 Agilent Technologies Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv		 Oligo Array in situ oligonucleotide, Mycobacterium tuberculosis H37Rv 241K Whole Genome Tilling Array,
5 GPL9803 SynComm1: Synthetic Human Gut Community GeneChip, v1.0 59,833 Washington University 2009-12-15 Affymetrix Bacteroides thetaiotaomicron VPI-5482,Bacteroides sp. WH2,Ruminococcus obeum ATCC 29174,Ruminococcus torques ATCC 27756,Dorea longicatena DSM 13814,Clostridium scindens ATCC 35704,Bacteroides ovatus ATCC 8483,Bacteroides uniformis ATCC 8492,Faecalibacteri
Bacteroides thetaiotaomicron VPI-5482,Bacteroides sp. WH2,Ruminococcus obeum ATCC 29174,Ruminococcus torques ATCC 27756,Dorea longicatena DSM 13814,Clostridium scindens ATCC 35704,Bacteroides ovatus ATCC 8483,Bacteroides uniformis ATCC 8492,Faecalibacteri		 GeneChip in situ oligonucleotide, SynComm1: Synthetic Human Gut Community GeneChip, v1.0,
6 GPL9697 IPMC/CNRS-Agilent_Ehrlichia ruminantium strains Gardel and Welgevonden_4x44k 45,220 IPMC/CNRS 2009-11-18 Agilent Technologies Ehrlichia ruminantium
Ehrlichia ruminantium		 Oligo Array in situ oligonucleotide, IPMC/CNRS-Agilent_Ehrlichia ruminantium strains Gardel and Welgevonden_4x44k,
7 GPL9479 Acidobacteria 42K phylochip 42,194 Auburn University 2009-10-22 Nimblegen Acidobacteria
Acidobacteria		 Oligo Array in situ oligonucleotide, Acidobacteria 42K phylochip, The data table contains 42K identifiers for 42K x 3 (triplicate probes) on the array. NGD and POS files lost due to a computer crash.
8 GPL9688 E. coli K12 4x44K array 39,522 Synmikro 2009-11-17 Oxford Gene Technology Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 Oligo Array spotted oligonucleotide, E. coli K12 4x44K array, Product code 10012
9 GPL9417 Streptomyces coelicolor Affymetrix array 22,779 University of Warwick 2009-10-09 Affymetrix Streptomyces coelicolor A3(2)
Streptomyces coelicolor A3(2)		 GeneChip in situ oligonucleotide, Streptomyces coelicolor Affymetrix array,
10 GPL9800 PFGRC Burkholderia mallei/pseudomallei 9.9K oligo array v2 22,176 Khon Kaen University 2009-12-15 Pathogen Functional Genomics Resource Center (PFGRC) at the JCVI Burkholderia mallei,Burkholderia pseudomallei
Burkholderia mallei,Burkholderia pseudomallei		 Oligo Array spotted oligonucleotide, PFGRC Burkholderia mallei/pseudomallei 9.9K oligo array v2,
11 GPL9696 Prevotella ruminicola whole genome array 15,744 University of Illinois 2009-11-17 Agilent Prevotella ruminicola 23
Prevotella ruminicola 23		 Oligo Array in situ oligonucleotide, Prevotella ruminicola whole genome array,
12 GPL9698 IPMC/CNRS-Agilent_Ehrlichia ruminantium strains Gardel and Welgevonden_8x15k 15,744 IPMC/CNRS 2009-11-18 Agilent Technologies Ehrlichia ruminantium
Ehrlichia ruminantium		 Oligo Array in situ oligonucleotide, IPMC/CNRS-Agilent_Ehrlichia ruminantium strains Gardel and Welgevonden_8x15k,
13 GPL9765 Agilent Clostridium perfringens 15K array 15,744 Institut Pasteur 2009-12-07 Agilent Technologies Clostridium perfringens
Clostridium perfringens		 Oligo Array in situ oligonucleotide, Agilent Clostridium perfringens 15K array, Clostridium Perfringens S13 expression array (Genome + plasmide) The ID column represents the Agilent Feature Extraction feature number.
14 GPL9823 Genotypic Custom Designed M. smegmatis Gene Expression 15K Profiling Microarray 15,207 Bionivid Technology [P] Ltd 2009-12-23 Agilent Mycobacterium smegmatis str. MC2 155
Mycobacterium smegmatis str. MC2 155		 Oligo Array in situ oligonucleotide, Genotypic Custom Designed M. smegmatis Gene Expression 15K Profiling Microarray,
15 GPL9493 Bacillus cereus ATCC 14579, 3rd design, Agilent 8X15K 11,240 WUR 2009-10-29 Agilent Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579		 Oligo Array in situ oligonucleotide, Bacillus cereus ATCC 14579, 3rd design, Agilent 8X15K,
16 GPL9721 Bacillus cereus Bc14579 - 3rd design (11K array) 11,240 Wageningen University and Research centre 2009-11-25 Agilent Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579		 Oligo Array in situ oligonucleotide, Bacillus cereus Bc14579 - 3rd design (11K array),
17 GPL9359 WCFS Lactobacillus plantarum 11K 60-mer array, Version 2 10,807 NIZO food research 2009-10-06 Agilent Technologies Lactobacillus plantarum WCFS1
Lactobacillus plantarum WCFS1		 Oligo Array in situ oligonucleotide, WCFS Lactobacillus plantarum 11K 60-mer array, Version 2,
18 GPL9817 TNO/NimbleGen 60-mer 071112 Bacillus subtilis subsp. subtilis strain 168 4x72K array 8,208 TNO 2009-12-18 NimbleGen Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168		 Oligo Array in situ oligonucleotide, TNO/NimbleGen 60-mer 071112 Bacillus subtilis subsp. subtilis strain 168 4x72K array, NimbleGen design name 071112_Bsub_168_EXP_X4 (each slide contains 4x72,000 probes). A gene expression design for 4,104 genes from B.subtilis subsp. subtilis strain 168 NC_000964 with eight probe pairs (PM/MM) per gene. Each probe is replicated 2 times. The design includes control probes. Native array description files (ndf, ngd) are linked below as supplementary files. Multiple different probe sequences per gene. Probe sequences available in ndf file.
19 GPL9691 Agilent A. pleuropneumoniae 15 K expression array 7,431 Huazhong Agricultural University 2009-11-17 Agilent Actinobacillus pleuropneumoniae
Actinobacillus pleuropneumoniae		 Oligo Array in situ oligonucleotide, Agilent A. pleuropneumoniae 15 K expression array,
20 GPL9436 AgResearch, Rumen Microbial Genomics_Bpr_Mru_20K_v1_Print 121 6,418 University of Illinois 2009-10-13 AgResearch, Invermay Butyrivibrio proteoclasticus B316,Methanobrevibacter ruminantium M1
Butyrivibrio proteoclasticus B316,Methanobrevibacter ruminantium M1		 Oligo Array spotted oligonucleotide, AgResearch, Rumen Microbial Genomics_Bpr_Mru_20K_v1_Print 121,
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