Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(653)		   Primates
(11)		   Rodents
(453)		   Mammals
(18)		   Vertebrates
(63)		   Invertebrates
(184)		   Plants
(209)		   Bacteria
(60)		   Viruses
(1)		   Phages
(0)		   Unclassified
(26)		   All
(1,680)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(3)		   Tiling Array
(0)		   cDNA Array
(8)		   Oligo Array
(44)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(5)		   Other
(0)		   All
(60)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Using Shewanella baltica ecotypes as a model for transcriptional variation (GSE37672) [Oligo Array] Rodrigues_S.baltica_30K (GPL15082) UT Arlington 2012-04-30 Shewanella baltica OS155
Shewanella baltica OS155		 397,080
(5,515 x 72) 		72 by_platform
by_series
2 Salmonella Typhimurium: Heat-shocked cells vs. control cells and acid-shocked cells vs. control cells (GSE37636) [Oligo Array] Agilent-027388 Salmonella typhimurium SL1344 (GPL15227) institute of Food Research 2012-04-27 Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium		 377,856
(15,744 x 24) 		24 by_platform
by_series
3 Neisseria meningitidis strain MC58 and α522 grown in PPM+ and exposed to human saliva, human whole blood and human cerebrospinal fluid (GSE38051) [Oligo Array] Wuerzburg Neisseria meningitidis 15.4K (GPL8787) University of Wuerzburg 2012-05-18 Neisseria meningitidis
Neisseria meningitidis		 368,640
(15,360 x 24) 		12 6 6 by_platform
by_series
4 Transcriptional profiling of 14 regulators required for Salmonella virulene (GSE38378) [cDNA Array] STv7S_MMCC (GPL4804) The J. Craig Venter Institute 2012-05-31 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S		 317,680
(5,776 x 55) 		55 by_platform
by_series
5 Cyanothece 51142 grown under high CO2 conditions: 0.03% CO2 vs. 8% CO2 (GSE37621) [Oligo Array] Agilent-018970 Cyanothece custom 8x15K (Feature Number version) (GPL15492) Washington University 2012-04-26 Cyanothece sp. ATCC 51142
Cyanothece sp. ATCC 51142		 315,441
(15,021 x 21) 		21 by_platform
by_series
6 Genomic diversity of Bifidobacterium adolescentis group (GSE38992) [Oligo Array] University of Verona Bifidobacterium 35K array (GPL15738) University of Parma 2012-06-28 Bifidobacterium adolescentis
Bifidobacterium adolescentis		 250,264
(35,752 x 7) 		7 by_platform
by_series
7 Zur regulon of Neisseria meningitidis (GSE38033) [Oligo Array] Wuerzburg Neisseria meningitidis 15.4K (GPL8787) University of Wuerzburg 2012-05-17 Neisseria meningitidis
Neisseria meningitidis		 168,960
(15,360 x 11) 		11 by_platform
by_series
8 Genome-wide gene expression to dibenzofuran in Sphingomonas wittichii RW1 (GSE37328) [Oligo Array] Agilent-021656 Sphingomonas wittichii RW1 [ORF Name version] (GPL15452) UNIL 2012-04-17 Sphingomonas wittichii RW1
Sphingomonas wittichii RW1		 149,380
(5,335 x 28) 		28 by_platform
by_series
9 Expression data from Burkholderia cepacia IST408 bceE and bceF mutants (GSE38183) [GeneChip] Affymetrix IST_IBB Burkholderia 15K v1.0 [CDF: BCC1sa520656F_Xspecies.CEL80] (GPL15600) Instituto Superior Tecnico 2012-05-23 Burkholderia cepacia
Burkholderia cepacia		 147,970
(14,797 x 10) 		10 by_platform
by_series
10 H. salinarum transcriptome dynamics in response to 0.85mM extracellular copper (GSE39028) [Oligo Array] ISB Halobacterium Spotted Microarray [gene-centered version] (GPL13682) Institute for Systems Biology 2012-06-29 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 117,600
(2,400 x 49) 		49 by_platform
by_series
11 Adaptive mutations that prevent cross-talk enable the expansion of paralogous signaling protein families (GSE37545) [Oligo Array] Agilent-032577 Custom Caulobacter crescentus NA1000 15k array (GPL15487) Massachusetts Institute of Technology 2012-04-24 Caulobacter crescentus NA1000
Caulobacter crescentus NA1000		 110,208
(15,744 x 7) 		7 by_platform
by_series
12 Genes differentially expressed Haloferax mediterranei strains: control wild-type strain vs ΔphaEC strain (GSE37421) [Oligo Array] Agilent-035154 HFM87_33500_exp_v2 (GPL15465) Institute of Microbiology, Chinese Academy of Sciences 2012-04-19 Haloferax mediterranei
Haloferax mediterranei		 94,464
(15,744 x 6) 		6 by_platform
by_series
13 Transcriptional profiling of FeHm effects on Haemophilus influenzae 86-028NP and R2846 (GSE38649) [Oligo Array] Nimblegen custom Haemophilus influenzae multi-genome array (GPL6594) University of Oklahoma Health Sciences Center 2012-06-11 Haemophilus influenzae
Haemophilus influenzae		 86,244
(7,187 x 12) 		12 by_platform
by_series
14 Expression data from control and colicin M treated E. coli MG1655 culture (GSE37026) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) university of ljubljana, biotechnical faculty 2012-04-04 Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 81,664
(10,208 x 8) 		8 by_platform
by_series
15 Mutational analysis of the pentose phosphate pathway and the Entner-Doudoroff pathway in Gluconobacter oxydans reveals improved growth of an edd-eda deletion mutant on mannitol (GSE38933) [Oligo Array] FZ_IBG-1_Goxydans_10K_Ver1 array (GPL15741) Forschungszentrum Jülich GmbH 2012-06-26 Gluconobacter oxydans 621H
Gluconobacter oxydans 621H		 77,760
(8,640 x 9) 		9 by_platform
by_series
16 Transcriptional profile of Pseudomonas syringae pv phaseolicola at low temperature (GSE38423) [cDNA Array] Microarray of P. syringae pv phaseolicola NPS3121 (GPL7115) Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional 2012-06-02 Pseudomonas syringae pv. phaseolicola
Pseudomonas syringae pv. phaseolicola		 76,032
(12,672 x 6) 		6 by_platform
by_series
17 Further Insights into the Mode of Action of the Lipoglycopeptide Telavancin through Global Gene Expression Studies (GSE37272) [Oligo Array] JCVI PFGRC Staphylococcus aureus 22K v6 array designed primarily based on strain COL (GPL5879) Illinois State University 2012-04-13 Staphylococcus aureus
Staphylococcus aureus		 75,840
(5,056 x 15) 		15 by_platform
by_series
18 Slr0643, a S2P Homolog, Is Essential for Acid Acclimation in Cyanobacterium Synechocystis sp. PCC 6803 (GSE37747) [cDNA Array] Synechocystis cDNA microarray ver. 2.0 (GPL15530) South China University of Technology 2012-05-03 Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803		 74,208
(3,092 x 24) 		24 by_platform
by_series
19 Transcriptome of dehydrated vs hydrated Salmonella cells (GSE38475) [cDNA Array] STv7bEws_MMCC (GPL11279) Vaccine Research Institute of San Diego 2012-06-04 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344		 69,312
(17,328 x 4) 		4 by_platform
by_series
20 The AmyR regulon in Erwinia amylovora (GSE37064) [cDNA Array] Agilent-021826 UIUC Erwinia 15K.V1.0 (GPL13939) TAMU 2012-04-05 Erwinia amylovora
Erwinia amylovora		 68,040
(4,860 x 14) 		14 by_platform
by_series
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