| 1 |
GPL15 |
HP_002 |
4,608 |
Stanford Microarray Database (SMD) |
2001-07-25 |
|
Helicobacter pylori
 |
cDNA Array |
spotted DNA/cDNA, HP_002, A microarray with 4623 spot features. Tip Configuration: Standard 16-tip Columns per Sector: 17 Rows per Sector: 17 Column Spacing: 240 Row Spacing: 240 |
| 2 |
GPL18 |
ecoli_8.0 |
5,764 |
Stanford Microarray Database (SMD) |
2001-07-30 |
|
Escherichia coli
 |
cDNA Array |
spotted DNA/cDNA, ecoli_8.0, A microarray with 5764 spot features. Tip Configuration: Standard 16-tip Columns per Sector: 19 Rows per Sector: 19 Column Spacing: 200 Row Spacing: 200 |
| 3 |
GPL16 |
ecoli_3.0 |
5,760 |
Stanford Microarray Database (SMD) |
2001-07-30 |
|
Escherichia coli
|
cDNA Array |
spotted DNA/cDNA, ecoli_3.0, A microarray with 5760 spot features. Tip Configuration: Standard 16-tip Columns per Sector: 18 Rows per Sector: 20 Column Spacing: 1.1 Row Spacing: 1.1 |
| 4 |
GPL17 |
ecoli_4.3 |
4,896 |
Stanford Microarray Database (SMD) |
2001-07-30 |
|
Escherichia coli
|
cDNA Array |
spotted DNA/cDNA, ecoli_4.3, A microarray with 4896 spot features. Tip Configuration: Standard 16-tip Columns per Sector: 18 Rows per Sector: 17 Column Spacing: 173 Row Spacing: 173 |
| 5 |
GPL73 |
[Ecoli] Affymetrix E. coli Genome Array |
7,312 |
Affymetrix, Inc. |
2002-02-19 |
Affymetrix |
Escherichia coli K-12
 |
GeneChip |
in situ oligonucleotide, [Ecoli] Affymetrix E. coli Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 7312 entries and was indexed 29-Jan-2002. Contains probes for more than 4,200 known open reading frames of E. coli. Also contains probe sets for stable RNA species as well as intergenic regions that do not correspond to known ORFs. Sequence information for probes corresponds to the M54 version of E. coli Genome Project database at the University of Wisconsin. Sequences corresponding to both characterized genes and those whose function is unknown can be identified according to the numbering convention used by the E. coli Genome Project database. Keywords = high density oligonucleotide array |
| 6 |
GPL84 |
[Pae_G1a] Affymetrix Pseudomonas aeruginosa Array |
5,900 |
Affymetrix, Inc. |
2002-02-19 |
Affymetrix |
Pseudomonas aeruginosa
 |
GeneChip |
in situ oligonucleotide, [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This GeneChip probe array is a powerful tool for monitoring trascriptional regulation and antimicrobial agent response of P. aeruginosa. The array represents the annotated genome of P. aeruginosa strain PA01 and includes 5,549 protein-coding sequences, 18 tRNA genes, a representative of the ribosomal RNA cluster and 117 genes present in strains other than PA01. In addition, 199 probe sets corresponding to all intergenic regions exceeding 600 base pairs have been included. The selected probes have been screened against sequence homologies in the existing database of human genes. Keywords = high density oligonucleotide array |
| 7 |
GPL102 |
E. coli Panorama Gene Arrays |
4,290 |
NIDDK |
2002-02-23 |
|
Escherichia coli
|
cDNA Array |
spotted DNA/cDNA, E. coli Panorama Gene Arrays, Sigma-Genosys Panorama E. coli Gene Arrays. Each Panorama array contains PCR-amplified open reading frames (ORFs) from the E. coli K-12 (MG1655) genome. The majority of ORFs have been amplified from start to stop codon. All of the 4,290 ORFs have been printed in duplicate at 10 ng per spot onto positively charged nylon hybridization membranes. |
| 8 |
GPL162 |
[uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip |
5,355 |
University of Wyoming |
2002-05-10 |
|
Rhodobacter sphaeroides 2.4.1
 |
GeneChip |
in situ oligonucleotide, [uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip, 4242 candidate protein-encoding gene models Keywords = genechip Keywords = microarray Keywords = expression profile Keywords = transcription |
| 9 |
GPL189 |
Sigma Genosys Panorama Escherichia coli Gene Array |
4,314 |
Sigma-Genosys |
2002-06-13 |
Sigma Genosys |
Escherichia coli
|
cDNA Array |
spotted DNA/cDNA, Sigma Genosys Panorama Escherichia coli Gene Array, The Panorama Escherichia coli Gene Array was developed using E. coli ORFmers (PCR primers). The PCR primers were developed as part of a collaboration with the E. coli Genome Group, headed by Dr. Fred Blattner at the Department of Genetics, University of Wisconsin-Madison (http://www.genome.wisc.edu). The array contains 4,290 PCR-amplified ORFs, representing all of the protein-encoding genes. |
| 10 |
GPL188 |
Sigma Genosys Panorama Bacillus subtilis Gene Array |
4,107 |
Sigma-Genosys |
2002-06-13 |
Sigma Genosys |
Bacillus subtilis
 |
cDNA Array |
spotted DNA/cDNA, Sigma Genosys Panorama Bacillus subtilis Gene Array, The Panorama Bacillus subtilis Gene Array contains 4,107 PCR-amplified ORFs, representing all of the protein-encoding genes, spotted in duplicate. |
| 11 |
GPL196 |
Sigma Genosys Panorama Mycobacterium tuberculosis Gene Array |
3,876 |
Sigma-Genosys |
2002-06-13 |
Sigma Genosys |
Mycobacterium tuberculosis
 |
cDNA Array |
spotted DNA/cDNA, Sigma Genosys Panorama Mycobacterium tuberculosis Gene Array, The Panorama Mycobacterium tuberculosis Gene Array contains 3,875 PCR-amplified open reading frames from strain H37Rv. The entire genome contains 3,918 putative ORFs. However, extensive homology in the remaining ORFs renders analysis of these ORFs redundant. PCR products have been designed to be less than 500 bp in length and in most part have been designed to represent a region of the ORF that has as little homology to other ORFs as possible. The gene arrays are 8 cm x 24 cm in size and contain equal mass of all the genes. |
| 12 |
GPL190 |
Sigma Genosys Panorama Helicobacter pylori Gene Array |
1,681 |
Sigma-Genosys |
2002-06-13 |
Sigma Genosys |
Helicobacter pylori
|
cDNA Array |
spotted DNA/cDNA, Sigma Genosys Panorama Helicobacter pylori Gene Array, The Panorama Helicobacter pylori Gene Array contains 1,681 PCR-amplified open reading frames (ORFs), representing all putative H. pylori strain 26695 protein-coding genes (1,590 genes) and 91 protein-coding genes of H. pylori strain J99 that are unique to this strain. For the majority of ORFs, the PCR products have been designed to represent a region of the ORF that has as little homology to other ORFs as possible. The gene arrays are 8 cm x 12 cm in size and contain equal mass of all the genes. |
| 13 |
GPL199 |
[Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array |
7,312 |
Affymetrix, Inc. |
2002-07-01 |
Affymetrix |
Escherichia coli K-12
|
GeneChip |
in situ oligonucleotide, [Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 7312 entries and was indexed 20-May-2002. The GeneChip E. coli Antisense Genome Array can be used for examining expression of all known E. coli genes and discovering novel, uncharacterized intergenic transcripts. The array contains probe sets to detect the antisense strand of more than 4,200 known open reading frames. In addition, over 1,350 intergenic sequences can be interrogated in both directions permitting functional characterization of potentially important shorter expressed sequences. Sequence information for probes on the array correspond to the M49 version of the E. coli Genome Project database at the University of Wisconsin. Keywords = high density oligonucleotide array |
| 14 |
GPL212 |
Buchnera (Sg) Sigma Slide |
3,168 |
University of Arizona |
2002-10-11 |
|
Buchnera aphidicola (Schizaphis graminum)
) |
cDNA Array |
spotted DNA/cDNA, Buchnera (Sg) Sigma Slide, Spot ID Numbers for Buchnera (Schizaphis graminum) DNA microarray. SigmaScreen slides were stamped on 12 Nov 2001. Keywords = aphid endosymbiont |
| 15 |
GPL224 |
STv2_MMCC |
5,184 |
Vaccine Research Institute of San Diego |
2002-12-12 |
|
Salmonella enterica
 |
cDNA Array |
spotted DNA/cDNA, STv2_MMCC, Custom made Salmonella array |
| 16 |
GPL266 |
Bacillus_anthracis_CGH |
9,216 |
The Institute for Genomic Research |
2003-03-10 |
|
Bacillus anthracis
 |
cDNA Array |
spotted DNA/cDNA, Bacillus_anthracis_CGH, Amplicons representing 79 of 217 and 41 of 122 genes from pXO1 and pXO2 respectively, and 3601 of 5753 chromosomal genes as predicted by Glimmer 30 ( and see supplemental methods) were arrayed onto glass microscope slides (Telechem, Inc). Redundant genes were generally represented once or a few times on the array. NOTE: N/A indicates that during the completion of the sequencing and annotation project these coding regions were removed. Annotation is not provided for plasmid genes as these genes were not annotated by TIGR. All spots that are included have primer sequences included. Amplicon sequences are included only where the amplicon was contained within the final coding region and matched the sequence exactly. Keywords = Bacillus anthracis, Bacillus cereus, Comparative Genomic Hybridization |
| 17 |
GPL280 |
NIAID - Mtaa |
4,416 |
National Institute of Allergy and Infectious Diseases |
2003-03-28 |
|
Mycobacterium tuberculosis
|
Oligo Array |
spotted oligonucleotide, NIAID - Mtaa, Printing by NIAID / Microarray Research Facility Surface type: non-adsorptive, polylysine-coated glass Attachment: covalent, (UV-treated polylysine) Array description: The custom microarrays are manufactured by the Microarray Research Facility of the National Institute of Allergy and Infectious Diseases (NIH/NIAID). Microarrays are printed with an Omnigrid robotic arrayer by GeneMachines (http://www.genemachines.com) that is fitted with a printhead and 16 SMP5 print tips from Telechem (http://www.arrayit.com). The M. tuberculosis microarray (Mtaa) probe set is based on 70mer oligonucleotides from Qiagen's Tuberculosis Genome Oligo Set V1 (http://oligos.qiagen.com/arrays/omad.php). Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in 4XSSC print buffer at a normalized 25 micromolar concentration. The Mtaa microarray spot densities are 250 microns(center-to-center). The microarrays are printed on poly-L-lysine coated slides and post-processed according to the procedures on the Stanford website: http://cmgm.stanford.edu/pbrown/protocols/index.html |
| 18 |
GPL331 |
STv3_MMCC |
5,184 |
Vaccine Research Institute of San Diego |
2003-05-29 |
|
Salmonella enterica
|
cDNA Array |
spotted DNA/cDNA, STv3_MMCC, Custom made Salmonella array |
| 19 |
GPL343 |
[Bsubtilis] Affymetrix Bsubtilis Genome Array |
5,039 |
Affymetrix, Inc. |
2003-06-23 |
Affymetrix |
Bacillus subtilis
|
GeneChip |
in situ oligonucleotide, [Bsubtilis] Affymetrix Bsubtilis Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html 5021 entries and was indexed 30-Apr-2003 |
| 20 |
GPL352 |
CampyChip1.2 |
5,760 |
National Research Council |
2003-07-10 |
|
Campylobacter jejuni
 |
cDNA Array |
spotted DNA/cDNA, CampyChip1.2, A microarray with 5760 spot features corresponding to almost all ORFs in the Campylobacter jejuni 11168 genome (spots in triplicate). Blocks per chip:24 Columns per block:15 Rows per block:16 |