Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(0)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(5)
  HT-Seq
(0)
  Other
(21)
  All
(3,409)
 
1   |   2   |   3   |   4   |   5      »      [171]
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 The Condition-Dependent Transcriptional Landscape of Burkholderia pseudomallei (GSE43205) [Tiling Array] NimbleGen Burkholderia pseudomallei K96243 385K tiling array [071211_BPK96243_CO_Tiling] (GPL16432) Genome Institute of Singapore 2012-12-30 Burkholderia pseudomallei
Burkholderia pseudomallei
129,249,924
(389,307 x 332)
24 1 307 by_platform
by_series
2 Genomic Acquisition of Virulence Factors in Natural Isolates of Burkholderia (GSE18766) [Oligo Array] 081118_Sims_GIS_multi_Burkh_cgh (GPL9490) GENOME INSTITUTE OF SINGAPORE 2009-10-27 Burkholderia thailandensis
Burkholderia thailandensis
17,937,136
(366,064 x 49)
49 by_platform
by_series
3 Analysis of the Haloferax volcanii Transcriptome (GSE18066) [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) The Ohio State Uinversity 2009-09-10 Haloferax volcanii
Haloferax volcanii
15,836,576
(259,616 x 61)
1 60 by_platform
by_series
4 CGH analysis of 39 Lactococcus lactis strains. (GSE12638) [Tiling Array] Lactococcus lactis pangenome 385K short oligo array (GPL7231) CMBI 2008-09-02 Lactococcus lactis subsp. cremoris
Lactococcus lactis subsp. cremoris
15,189,681
(389,479 x 39)
39 by_platform
by_series
5 Halobacterium salinarum NRC-1 growth curve, tiling arrays (GSE12923) [Tiling Array] Halobacterium tiling array Agilent 015962 (GPL7255) Institute for Systems Biology 2008-09-24 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1
12,905,712
(243,504 x 53)
53 by_platform
by_series
6 Prevalence of transcription promoters within archaeal operons and coding sequences (GSE13150) [Tiling Array] Halobacterium tiling array Agilent 015962 (GPL7255) Institute for Systems Biology 2008-10-10 Halobacterium sp. NRC-1
Halobacterium sp. NRC-1
12,905,712
(243,504 x 53)
53 by_platform
by_series
7 Mapping the DNA-binding response regulators of Desulfovibrio vulgaris Hildenborough (GSE25163) [Tiling Array] NimbleGen Desulfovibrio vulgaris 385k array (GPL11167) Lawrence Berkeley Lab 2010-11-05 Desulfovibrio vulgaris
Desulfovibrio vulgaris
12,480,380
(367,070 x 34)
34 by_platform
by_series
8 Comparative genomic hybridization study of Streptococcus pneumoniae (GSE29501) [Oligo Array] Agilent-031422 S_pneumoniae_CGH (GPL13281) J Craig Venter Institute 2011-05-24 Streptococcus pneumoniae,Streptococcus pneumoniae TIGR4
Streptococcus pneumoniae,Streptococcus pneumoniae TIGR4
11,531,100
(45,220 x 255)
255 by_platform
by_series
9 Comparative genomic hybridization study of Neisseria meningitidis (GSE30813) [Oligo Array] Agilent-032741 Neisseria_CGH (GPL13375) J Craig Venter Institute 2011-07-20 Neisseria meningitidis
Neisseria meningitidis
11,305,000
(45,220 x 250)
250 by_platform
by_series
10 Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding (GSE41195) [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) University of Wisconsin - Madison 2012-09-27 Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655
10,968,902
(378,238 x 29)
29 by_platform
by_series
11 Transcript map of Shewanella oneidensis MR-1 (GSE45217) [Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797) University of California 2013-03-15 Shewanella oneidensis MR-1
Shewanella oneidensis MR-1
10,118,180
(2,023,636 x 5)
5 by_platform
by_series
12 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome (GeneChip) (GSE48532) [GeneChip] [SynComm1a520717] SynComm1: Synthetic Human Gut Community GeneChip, v1.0 (GPL9803) Washington University School of Medicine 2013-07-03 Bacteroides thetaiotaomicron VPI-5482
Bacteroides thetaiotaomicron VPI-5482
10,051,944
(59,833 x 168)
168 by_platform
by_series
13 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome (GSE48537) [GeneChip] [SynComm1a520717] SynComm1: Synthetic Human Gut Community GeneChip, v1.0 (GPL9803) Washington University School of Medicine 2013-07-03 Bacteroides thetaiotaomicron VPI-5482
Bacteroides thetaiotaomicron VPI-5482
10,051,944
(59,833 x 168)
168 by_platform
by_series
14 Analysis of Geobacter sulfurreducens under multiple growth conditions (GSE22512) [Tiling Array] UCSD Nimblegen Geobacter sulfurreducens 381K Tiling Array 2007 (Probe) (GPL9112) UCSD 2010-06-22 Geobacter sulfurreducens PCA
Geobacter sulfurreducens PCA
9,910,524
(381,174 x 26)
26 by_platform
by_series
15 Rho and NusG suppress pervasive antisense transcription in Escherichia coli (GSE41940) [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) UW-Madison 2012-10-31 Escherichia coli K-12
Escherichia coli K-12
9,834,188
(378,238 x 26)
26 by_platform
by_series
16 Novel gene discovery in up to 10 ETEC strains and production of species microarray. Discovery of conserved and unique ETEC genes by comparative genome hybridization studies. (GSE25601) [Oligo Array] Agilent-029784 ETEC_CGH (GPL10979) J Craig Venter Institute 2010-11-24 Escherichia coli
Escherichia coli
9,767,520
(45,220 x 216)
216 by_platform
by_series
17 Chip-chip from Escherichia coli MG1655 K-12, WT and ∆fnr strains (GSE41186) [Tiling Array] UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design) (GPL8708) University of Wisconsin - Madison 2012-09-27 Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655
9,455,950
(378,238 x 25)
25 by_platform
by_series
18 Mutation Mapping of 31 Streptococcus suis strains (GSE26052) [Oligo Array] ICDC Streptococcus suis GZ1 tilling arrays (MAP01, MAP02) (GPL11315) China CDC 2010-12-14 Streptococcus suis
Streptococcus suis
9,023,852
(291,092 x 31)
31 by_platform
by_series
19 ChIP-chip of Geobacter sulfurreducens PCA with antibody against RNAP and RpoD under various conditions (GSE22503) [Tiling Array] UCSD Nimblegen Geobacter sulfurreducens 381K Tiling Array 2007 (Probe) (GPL9112) UCSD 2010-06-22 Geobacter sulfurreducens PCA
Geobacter sulfurreducens PCA
8,004,654
(381,174 x 21)
21 by_platform
by_series
20 Strand-specific transcriptome profiling with directly labeled RNA on genomic tiling microarrays (GSE25876) [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) The Forsyth Institute 2010-12-06 Porphyromonas gingivalis
Porphyromonas gingivalis
7,376,526
(409,807 x 18)
12 6 by_platform
by_series
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