| 1 |
GPL10230 |
[Vharveyis520694F] US Naval Research Laboratory V campbellii BAA-1116 whole genome microarray |
12,717 |
US Naval Research Laboratory |
2010-03-19 |
Affymetrix |
Vibrio harveyi ATCC BAA-1116
 |
GeneChip |
in situ oligonucleotide, [Vharveyis520694F] US Naval Research Laboratory V campbellii BAA-1116 whole genome microarray, Affymetrix DNA microarray (Vharveyi520694F) that targets 4831 total CDS from the fully assembled and annotated V. harveyi BAA-1116 genome (Naval Research Laboratory sequencing effort GenBank CP001223-5) |
| 2 |
GPL162 |
[uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip |
5,355 |
University of Wyoming |
2002-05-10 |
|
Rhodobacter sphaeroides 2.4.1
 |
GeneChip |
in situ oligonucleotide, [uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip, 4242 candidate protein-encoding gene models Keywords = genechip Keywords = microarray Keywords = expression profile Keywords = transcription |
| 3 |
GPL9209 |
[TTHB8401a520105F] Riken Thermus thermophilus HB8 4K mRNA custom array, library Rev.2 |
3,492 |
RIKEN Harima Institute |
2009-09-17 |
Affymetrix |
Thermus thermophilus HB8
 |
GeneChip |
in situ oligonucleotide, [TTHB8401a520105F] Riken Thermus thermophilus HB8 4K mRNA custom array, library Rev.2, |
| 4 |
GPL4519 |
[TB-All-Antisense] Affymetrix M. tuberculosis Antisense Array |
6,022 |
Affymetrix, Inc. |
2006-11-03 |
Affymetrix |
Mycobacterium tuberculosis H37Rv
 |
GeneChip |
in situ oligonucleotide, [TB-All-Antisense] Affymetrix M. tuberculosis Antisense Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Array name: TB-All-Antisense Part Number: 510285 Organism: Mycobacterium tuberculosis strain H37Rv Genome assembly: NC_000962.2 NetAffx version: Oct 2006 CSV version: 1.0 This annotation table was derived Affymetrix CSV file TB-All-Antisense_annot.csv [Version 1.0, 2006-10-31]. Appended README provides a guide to the contents of the CSV file containing annotations for the probe sets on the Affymetrix M. tuberculosis antisense array. |
| 5 |
GPL10397 |
[S_pneumoni530157] Affymetrix Streptococcus pneumoniae TIGR4 Array |
3,025 |
NCBI/NLM/NIH |
2010-05-06 |
Affymetrix |
Streptococcus pneumoniae TIGR4
 |
GeneChip |
in situ oligonucleotide, [S_pneumoni530157] Affymetrix Streptococcus pneumoniae TIGR4 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html |
| 6 |
GPL1339 |
[S_aureus] Affymetrix S. aureus Genome Array |
7,775 |
Affymetrix, Inc. |
2004-07-09 |
Affymetrix |
Staphylococcus aureus
 |
GeneChip |
in situ oligonucleotide, [S_aureus] Affymetrix S. aureus Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 Oct 18, 2012: annotation table updated with netaffx build 32 |
| 7 |
GPL10364 |
[SBRI/Sherman]-Mtb-10368-v1.0 |
4,297 |
Seattle Biomedical Research Institute |
2010-04-29 |
Seattle Biomedical Research Institute |
Mycobacterium tuberculosis
 |
Oligo Array |
spotted oligonucleotide, [SBRI/Sherman]-Mtb-10368-v1.0, |
| 8 |
GPL4692 |
[RMLchip3a520351] Affymetrix RML Custom Pathogenic chip 3 |
23,015 |
NIH |
2006-12-21 |
Affymetrix |
Coxiella burnetii,Rickettsia rickettsii,Chlamydia muridarum,Chlamydophila pneumoniae AR39,Staphylococcus epidermidis RP62A,Staphylococcus epidermidis ATCC 12228,Staphylococcus aureus subsp. aureus MW2,Borrelia burgdorferi B31,Coxiella burnetii RSA 493,Chl
 |
GeneChip |
in situ oligonucleotide, [RMLchip3a520351] Affymetrix RML Custom Pathogenic chip 3, custom pathogenic Affymetrix chip 3 manufactured for RML |
| 9 |
GPL8837 |
[rhofispaa520260F] Custom Vibrio parahaemolyticus GeneChip Array (Affymetrix) |
5,189 |
University of Iowa |
2009-07-09 |
Affymetrix Inc. |
Vibrio parahaemolyticus RIMD 2210633
 |
GeneChip |
in situ oligonucleotide, [rhofispaa520260F] Custom Vibrio parahaemolyticus GeneChip Array (Affymetrix), |
| 10 |
GPL15537 |
[PhyloChip] Affymetrix G2 PhyloChip |
8,741 |
University of California at San Francisco |
2012-05-08 |
Affymetrix |
Bacteria,Archaea
 |
GeneChip |
in situ oligonucleotide, [PhyloChip] Affymetrix G2 PhyloChip, 16S PhyloChip Probes target 16S rRNA genes. Probesets represent operational taxonomic units (OTUs). |
| 11 |
GPL84 |
[Pae_G1a] Affymetrix Pseudomonas aeruginosa Array |
5,900 |
Affymetrix, Inc. |
2002-02-19 |
Affymetrix |
Pseudomonas aeruginosa
 |
GeneChip |
in situ oligonucleotide, [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This GeneChip probe array is a powerful tool for monitoring trascriptional regulation and antimicrobial agent response of P. aeruginosa. The array represents the annotated genome of P. aeruginosa strain PA01 and includes 5,549 protein-coding sequences, 18 tRNA genes, a representative of the ribosomal RNA cluster and 117 genes present in strains other than PA01. In addition, 199 probe sets corresponding to all intergenic regions exceeding 600 base pairs have been included. The selected probes have been screened against sequence homologies in the existing database of human genes. Keywords = high density oligonucleotide array |
| 12 |
GPL11420 |
[NZ131a520662F] University of Oklahoma Health Sciences Center SPY49_NZ131 1.7K array |
1,704 |
University of Oklahoma Health Sciences Center |
2011-01-11 |
Affymetrix |
Streptococcus pyogenes NZ131
 |
GeneChip |
in situ oligonucleotide, [NZ131a520662F] University of Oklahoma Health Sciences Center SPY49_NZ131 1.7K array, |
| 13 |
GPL16245 |
[Gilmorea520187F] Affymetrix Custom Array - Gilmore SLARE E. faecalis |
3,693 |
NCBI/NLM/NIH |
2012-11-05 |
Affymetrix |
Enterococcus faecalis
 |
GeneChip |
in situ oligonucleotide, [Gilmorea520187F] Affymetrix Custom Array - Gilmore SLARE E. faecalis, Comment[ArrayExpressAccession] A-AFFY-84 affymetrix_netaffx tigr_cmr Term Source File http://www.affymetrix.com/analysis/ http://www.tigr.org/tigr-scripts/CMR2/CMRHomePage.spl |
| 14 |
GPL14584 |
[FRAGDIFFa520673F] Affymetrix Bacteroides fragilis NCTC 9343 array |
4,151 |
University of California, Davis |
2011-09-17 |
Affymetrix |
Bacteroides fragilis NCTC 9343
 |
GeneChip |
in situ oligonucleotide, [FRAGDIFFa520673F] Affymetrix Bacteroides fragilis NCTC 9343 array, |
| 15 |
GPL13175 |
[FDA_ECSGa520423F] Affymetrix Escherichia coli and Shigella 23K |
23,163 |
University of Maryland School of Medicine |
2011-02-15 |
Affymetrix |
Escherichia coli,Shigella
 |
GeneChip |
in situ oligonucleotide, [FDA_ECSGa520423F] Affymetrix Escherichia coli and Shigella 23K, |
| 16 |
GPL3154 |
[E_coli_2] Affymetrix E. coli Genome 2.0 Array |
10,208 |
Affymetrix, Inc. |
2005-11-23 |
Affymetrix |
Escherichia coli
 |
GeneChip |
in situ oligonucleotide, [E_coli_2] Affymetrix E. coli Genome 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® E. coli Genome 2.0 Array contains probe sets to detect transcripts from the K12 strain of E. coli and three pathogenic strains of E. coli. Using the new E. coli Genome 2.0 Array, researchers can gain a comprehensive view of three pathogenic forms of E. coli while continuing ongoing research projects with the K12 strain. The GeneChip E. coli Genome 2.0 Array includes approximately 10,000 probe sets for all 20,366 genes present in four strains of E. coli. Due to the high degree of similarity between the E. coli strains, whenever possible, a single probe set is tiled to represent the equivalent ortholog in all four strains. The GeneChip E. coli Genome 2.0 Array tiles probe sets over the entire open reading frame (ORF) of E. coli, includes over 700 intergenic regions, probes for various antibiotic resistance markers, and incorporates additional control and reporter genes from the previous generation E. coli array. |
| 17 |
GPL199 |
[Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array |
7,312 |
Affymetrix, Inc. |
2002-07-01 |
Affymetrix |
Escherichia coli K-12
 |
GeneChip |
in situ oligonucleotide, [Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 7312 entries and was indexed 20-May-2002. The GeneChip E. coli Antisense Genome Array can be used for examining expression of all known E. coli genes and discovering novel, uncharacterized intergenic transcripts. The array contains probe sets to detect the antisense strand of more than 4,200 known open reading frames. In addition, over 1,350 intergenic sequences can be interrogated in both directions permitting functional characterization of potentially important shorter expressed sequences. Sequence information for probes on the array correspond to the M49 version of the E. coli Genome Project database at the University of Wisconsin. Keywords = high density oligonucleotide array |
| 18 |
GPL4940 |
[Ecoli_antisense] Affymetrix E. coli 1286 Antisense Array |
4,405 |
Affymetrix, Inc. |
2007-03-07 |
Affymetrix |
Escherichia coli K-12
|
GeneChip |
in situ oligonucleotide, [Ecoli_antisense] Affymetrix E. coli 1286 Antisense Array, The GeneChip E. coli 1286 Antisense Array (manufactured circa 2001) can be used for examining expression of E. coli genes. The array contains probe sets to detect the antisense strand of open reading frames. Keywords = high density oligonucleotide array |
| 19 |
GPL73 |
[Ecoli] Affymetrix E. coli Genome Array |
7,312 |
Affymetrix, Inc. |
2002-02-19 |
Affymetrix |
Escherichia coli K-12
|
GeneChip |
in situ oligonucleotide, [Ecoli] Affymetrix E. coli Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 7312 entries and was indexed 29-Jan-2002. Contains probes for more than 4,200 known open reading frames of E. coli. Also contains probe sets for stable RNA species as well as intergenic regions that do not correspond to known ORFs. Sequence information for probes corresponds to the M54 version of E. coli Genome Project database at the University of Wisconsin. Sequences corresponding to both characterized genes and those whose function is unknown can be identified according to the numbering convention used by the E. coli Genome Project database. Keywords = high density oligonucleotide array |
| 20 |
GPL10910 |
[ChlpnV1a520166F] IHBI-C&T Chlamydia 2K v1.0_custom |
1,262 |
Institute of Health and Biomedical Innovation (IHBI) |
2010-09-14 |
Affymetrix |
Chlamydia trachomatis,Chlamydophila pneumoniae CWL029
 |
GeneChip |
in situ oligonucleotide, [ChlpnV1a520166F] IHBI-C&T Chlamydia 2K v1.0_custom, The custom Affymetrix microarray was designed from the genomes of the human pathogens Chlamydia pneumoniae CWL029 and Chlamydia trachomatis serovar D. |