Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(308)		   Primates
(0)		   Rodents
(254)		   Mammals
(18)		   Vertebrates
(11)		   Invertebrates
(40)		   Plants
(100)		   Bacteria
(50)		   Viruses
(0)		   Phages
(0)		   Unclassified
(3)		   All
(785)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(6)		   Tiling Array
(0)		   cDNA Array
(6)		   Oligo Array
(37)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(1)		   Other
(0)		   All
(50)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Gene expression in PAO1, clonal AES-1 and non-clonal isolates of Pseudomonas aeruginosa (GSE6122) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) University of Sydney 2006-10-24 Pseudomonas aeruginosa
Pseudomonas aeruginosa		 106,200
(5,900 x 18) 		18 by_platform
by_series
2 Gene expression in AES-2 clonal isolates of Pseudomonas aeruginosa (GSE10304) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) University of Sydney 2008-01-28 Pseudomonas aeruginosa
Pseudomonas aeruginosa		 47,200
(5,900 x 8) 		8 by_platform
by_series
3 P. aeruginosa PA14 gene expression in artificial sputum medium (ASMDM) (GSE18594) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) University of Sydney 2009-10-16 Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas aeruginosa UCBPP-PA14		 47,200
(5,900 x 8) 		8 by_platform
by_series
4 Gene expression in P. aeruginosa cystic fibrosis isolates grown on Nematode Growth Medium (GSE33275) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) University of Sydney 2011-10-27 Pseudomonas aeruginosa
Pseudomonas aeruginosa		 47,200
(5,900 x 8) 		8 by_platform
by_series
5 Ion transport and osmotic adjustment in E. coli in response to ionic and non-ionic osmotica (GSE12190) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) University of Tasmania 2008-07-21 Escherichia coli
Escherichia coli		 61,248
(10,208 x 6) 		6 by_platform
by_series
6 Transcriptional analysis of Chlamydia trachomatis Serovar D genes under different in-vitro hormonal conditions (GSE24119) [GeneChip] [ChlpnV1a520166F] IHBI-C&T Chlamydia 2K v1.0_custom (GPL10910) Institute of Health and Biomedical Innovation (IHBI) 2010-09-14 Chlamydia trachomatis
Chlamydia trachomatis		 20,192
(1,262 x 16) 		16 by_platform
by_series
7 Genome-wide Analysis of the Pho Regulon in a pstCA mutant of Citrobacter rodentium (GSE40906) [Oligo Array] WEHI_Citrobacterrodentium_15k_V1.0 (GPL7345) Walter and Eliza Hall Institute 2012-09-14 Citrobacter rodentium
Citrobacter rodentium		 251,904
(15,744 x 16) 		16 by_platform
by_series
8 Control of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA (GSE12876) [Oligo Array] WEHI_Citrobacterrodentium_15k_V1.0 (GPL7345) Walter and Eliza Hall Institute 2008-09-22 Citrobacter rodentium
Citrobacter rodentium		 125,952
(15,744 x 8) 		8 by_platform
by_series
9 non-M1 covRS-intact and -mutant GAS vs M1 controls (GSE23825) [Oligo Array] UTHSC/Kotb Streptococcus pyogenes 2.3K v2 (GPL10857) University of Queensland 2010-08-26 Streptococcus pyogenes
Streptococcus pyogenes		 80,416
(2,513 x 32) 		32 by_platform
by_series
10 5448 vs 5448R- in vivo 24h (GSE13656) [Oligo Array] UTHSC/Kotb Streptococcus pyogenes 2.3K v1 (GPL7661) University of Wollongong 2008-11-18 Streptococcus pyogenes
Streptococcus pyogenes		 16,296
(2,328 x 7) 		7 by_platform
by_series
11 Expression responses of lineage I and II Listeria monocytogenes strains to low pH and sodium diacetate (GSE11570) [Oligo Array] University of Tasmania Listeria monocytogenes 3K (GPL5334) University of Tasmania 2008-05-28 Listeria monocytogenes
Listeria monocytogenes		 45,712
(2,857 x 16) 		16 by_platform
by_series
12 Transcriptomic and phenotypic responses of L. monocytogenes with different growth efficiencies under acidic conditions (GSE19918) [Oligo Array] University of Tasmania Listeria monocytogenes 3K (GPL5334) University of Tasmania 2010-01-15 Listeria monocytogenes
Listeria monocytogenes		 39,998
(2,857 x 14) 		14 by_platform
by_series
13 Differential gene expression of Listeria monocytogenes during high hydrostatic pressure processing (GSE9179) [Oligo Array] University of Tasmania Listeria monocytogenes 3K (GPL5334) University of Tasmania 2007-09-27 Listeria monocytogenes
Listeria monocytogenes		 25,713
(2,857 x 9) 		9 by_platform
by_series
14 Physiology and genetic activity of Listeria monocytogenes during multi-hurdle stress induced cell death (GSE18796) [Oligo Array] University of Tasmania Listeria monocytogenes 3K (GPL5334) University of Tasmania 2009-10-29 Listeria monocytogenes
Listeria monocytogenes		 22,856
(2,857 x 8) 		8 by_platform
by_series
15 Pseudomonas aeruginosa gene expression in artificial sputum medium using a broad capture array designated the PANarray (GSE28152) [cDNA Array] University of Sydney CombiMatrix 12K PANarray (GPL13324) University of Sydney 2011-03-24 Pseudomonas aeruginosa
Pseudomonas aeruginosa		 82,008
(10,251 x 8) 		8 by_platform
by_series
16 Opaque vs Transparent transcriptome of Streptococcus pneumoniae serotype 2 strain D39 (GSE8797) [cDNA Array] University of London Streptococcus pneumoniae TIGR4/R6 Array v1 (GPL5053) University of Adelaide 2007-08-16 Streptococcus pneumoniae
Streptococcus pneumoniae		 57,760
(5,776 x 10) 		10 by_platform
by_series
17 Investigation of pneumococcal two-component signal transduction system RR/HK06 in TIGR4 (GSE5330) [cDNA Array] University of London Bacterial Microarray Group at St George's S. pneumoniae 2.3K (GPL4001) University of Adelaide 2006-07-17 Streptococcus pneumoniae
Streptococcus pneumoniae		 34,656
(5,776 x 6) 		6 by_platform
by_series
18 Investigation of pneumococcal two-component signal transduction system RR/HK06 in D39 (GSE5322) [cDNA Array] University of London Bacterial Microarray Group at St George's S. pneumoniae 2.3K (GPL4001) University of Adelaide 2006-07-17 Streptococcus pneumoniae
Streptococcus pneumoniae		 23,104
(5,776 x 4) 		4 by_platform
by_series
19 Genomic comparison of vancomycin susceptible and vancomycin intermediate Staphylococcus aureus pairs (GSE5047) [cDNA Array] TIGR Staphylococcus aureus version2 array (GPL3866) Austin Health 2006-06-11 Staphylococcus aureus
Staphylococcus aureus		 15,965
(3,193 x 5) 		5 by_platform
by_series
20 Transcritptome of a revR deletion mutant during Clostridium perfringens exponential phase growth. (GSE26508) [cDNA Array] Kyushu Univ. Clostridium perfringens strain 13 DNA 7K array v1 [chromosome and extra-chromosomal plasmid] (GPL11408) Monash University 2011-01-08 Clostridium perfringens str. 13
Clostridium perfringens str. 13		 22,936
(5,734 x 4) 		4 by_platform
by_series
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