Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(98)
  Tiling Array
(59)
  cDNA Array
(290)
  Oligo Array
(1,179)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(3)
  HT-Seq
(250)
  Other
(22)
  All
(1,901)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10976 NimbleGen Acetobacter aceti NBRC14818 4X72K array Univ. of Tokyo v1.0 3,642 The University of Tokyo 2010-09-24 NimbleGen Acetobacter aceti NBRC 14818
Acetobacter aceti NBRC 14818
Oligo Array in situ oligonucleotide, NimbleGen Acetobacter aceti NBRC14818 4X72K array Univ. of Tokyo v1.0, NimbleGen Prokaryotic Expression array (4x72K). A gene expression design for 3,643 sequences is based on the draft genome sequence of Acetobacter aceti NBRC14818. The length of probes is 60-mer and the number of probes is 9 pairs per gene. Each probe is replicated 2 times. Probe sequences are available in the '2009-06-23_RDKK198_Aace_60mer_expr.ndf' supplementary file.
2 GPL13399 whole-genome oligonucleotide array for Acidithiobacillus ferrooxidans ATCC 23270 3,132 central south university 2011-04-12 Sunbiotech Company (Beijing, China) Acidithiobacillus ferrooxidans ATCC 23270
Acidithiobacillus ferrooxidans ATCC 23270
Oligo Array spotted oligonucleotide, whole-genome oligonucleotide array for Acidithiobacillus ferrooxidans ATCC 23270, spotted 50-mer-based oligonucleotide
3 GPL9479 Acidobacteria 42K phylochip 42,194 Auburn University 2009-10-22 Nimblegen Acidobacteria
Acidobacteria
Oligo Array in situ oligonucleotide, Acidobacteria 42K phylochip, The data table contains 42K identifiers for 42K x 3 (triplicate probes) on the array. NGD and POS files lost due to a computer crash.
4 GPL11113 Agilent-024656 ATCC17978_ec 15,744 University of Adelaide 2010-10-25 Agilent Acinetobacter baumannii
Acinetobacter baumannii
Oligo Array in situ oligonucleotide, Agilent-024656 ATCC17978_ec,
5 GPL17813 Agilent-024656 ATCC17978_ec (Probe Name version) 13,660 Macquarie University 2013-10-22 Agilent Acinetobacter baumannii
Acinetobacter baumannii
Oligo Array in situ oligonucleotide, Agilent-024656 ATCC17978_ec (Probe Name version), *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL11113
6 GPL16041 Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F] 7,727 University of Rochester 2012-09-11 Affymetrix Acinetobacter baumannii
Acinetobacter baumannii
GeneChip in situ oligonucleotide, Affymetrix Acinetobacter baumannii GeneChip [PMDacba1a520551F],
7 GPL14114 Illumina Genome Analyzer IIx (Acinetobacter baumannii) 0 2011-08-04 Acinetobacter baumannii
Acinetobacter baumannii
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Acinetobacter baumannii),
8 GPL16729 Agilent-038224 Acinetobacter baumannii v1 15,744 CHUAC 2013-02-27 Agilent Technologies Acinetobacter baumannii ATCC 17978
Acinetobacter baumannii ATCC 17978
Oligo Array in situ oligonucleotide, Agilent-038224 Acinetobacter baumannii v1, Arrays of this design have barcodes that begin with 16038224 or 2538224. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
9 GPL8891 Prove-it Bacteria v 0.1 28 Mobidiag 2009-07-21 Clondiag Acinetobacter baumannii,Neisseria meningitidis,Klebsiella pneumoniae,Haemophilus influenzae,Staphylococcus aureus,Staphylococcus epidermidis,Streptococcus agalactiae,Streptococcus pneumoniae,Streptococcus pyogenes,Enterococcus faecalis,Enterococcus faeciu
Acinetobacter baumannii,Neisseria meningitidis,Klebsiella pneumoniae,Haemophilus influenzae,Staphylococcus aureus,Staphylococcus epidermidis,Streptococcus agalactiae,Streptococcus pneumoniae,Streptococcus pyogenes,Enterococcus faecalis,Enterococcus faeciu
Oligo Array spotted oligonucleotide, Prove-it Bacteria v 0.1, Diagnostic array for the simultaneous detection and identification of 12 bacterial pathogens at the species level.
10 GPL16388 Illumina HiSeq 2000 (Acinetobacter sp. ADP1) 0 2012-12-18 Acinetobacter sp. ADP1
Acinetobacter sp. ADP1
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Acinetobacter sp. ADP1),
11 GPL16687 Illumina Genome Analyzer IIx (Acinetobacter oleivorans DR1) 0 2013-02-15 Acinetobacter sp. DR1
Acinetobacter sp. DR1
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Acinetobacter oleivorans DR1),
12 GPL18314 Illumina HiSeq 2500 (Acinetobacter oleivorans DR1) 0 2014-02-21 Acinetobacter sp. DR1
Acinetobacter sp. DR1
HT Sequencing high-throughput sequencing, Illumina HiSeq 2500 (Acinetobacter oleivorans DR1),
13 GPL7644 Agilent Actinobacillus pleuropneumoniae 44K aCGH custom-array 32,690 Huazhong Agricultural University 2008-11-17 Agilent Actinobacillus pleuropneumoniae
Actinobacillus pleuropneumoniae
Oligo Array in situ oligonucleotide, Agilent Actinobacillus pleuropneumoniae 44K aCGH custom-array,
14 GPL9691 Agilent A. pleuropneumoniae 15 K expression array 7,431 Huazhong Agricultural University 2009-11-17 Agilent Actinobacillus pleuropneumoniae
Actinobacillus pleuropneumoniae
Oligo Array in situ oligonucleotide, Agilent A. pleuropneumoniae 15 K expression array,
15 GPL11003 DTU-VET-Actinobacillus pleuropneumoniae-135K array.v1 4,876 National Veterinary Institute, Technical University of Denmark 2010-09-30 NimbleGen Actinobacillus pleuropneumoniae
Actinobacillus pleuropneumoniae
Oligo Array in situ oligonucleotide, DTU-VET-Actinobacillus pleuropneumoniae-135K array.v1, native array description file: 090423_DTU_Actino_xRNA (for array no. 355074A) native array description file: 091013_DTU_Actino_xRNA (for arrays no. 382804A, 382816A, and 431045A)
16 GPL3648 AppChip1 (NRC-IBS Actinobacillus pleuropneumoniae L20) 4,608 National Research Council 2006-04-11 NRC-IBS Actinobacillus pleuropneumoniae
Actinobacillus pleuropneumoniae
cDNA Array spotted DNA/cDNA, AppChip1 (NRC-IBS Actinobacillus pleuropneumoniae L20), PCR primers were designed for 2025 ORFs from a draft genomic sequence of Actinobacillus pleuropneumoniae L20 which comprised 2091 ORFs on 66 contigs. For AppChip1, all genes are spotted in duplicate on the microarray and sheared total genomic DNA from A. pleuropneumoniae L20 and porcine DNA were spotted in the top row of each subarray as controls.
17 GPL8394 Agilent Actinobacillus pleuropneumoniae 3K expression profile custom-array 2,866 Huazhong Agricultural University 2009-04-03 Agilent Actinobacillus pleuropneumoniae
Actinobacillus pleuropneumoniae
Oligo Array in situ oligonucleotide, Agilent Actinobacillus pleuropneumoniae 3K expression profile custom-array,
18 GPL6658 AppChip2 (NRC-IBS Actinobacillus pleuropneumoniae L20) 5,376 National Research Council 2008-03-27 NRC-BRI Actinobacillus pleuropneumoniae serovar 5b str. L20
Actinobacillus pleuropneumoniae serovar 5b str. L20
cDNA Array spotted DNA/cDNA, AppChip2 (NRC-IBS Actinobacillus pleuropneumoniae L20), PCR primers were designed for 1954 ORFs from the completed genomic sequence of Actinobacillus pleuropneumoniae L20 which comprised 2012 ORFs. Good amplicons of length greater than 160 nt were obtained for 1846 ORFs representing 92% coverage of ORFs. All amplicons are spotted in duplicate on the microarray and sheared total genomic DNA from A. pleuropneumoniae L20 and porcine DNA were spotted in the bottom row of each subarray as controls.
19 GPL7284 BTI DNA microarray for Actinosynema pretiosum 69 Bioprocessing Technology Institute 2008-09-11 Bioprocessing Technology Institute, Singapore Actinosynnema pretiosum
Actinosynnema pretiosum
cDNA Array spotted DNA/cDNA, BTI DNA microarray for Actinosynema pretiosum,
20 GPL6779 AsalChip2 (NRC-IBS Aeromonas salmonicida A449) 12,288 National Research Council 2008-04-24 NRC-BRI Aeromonas salmonicida subsp. salmonicida A449
Aeromonas salmonicida subsp. salmonicida A449
cDNA Array spotted DNA/cDNA, AsalChip2 (NRC-IBS Aeromonas salmonicida A449), PCR primers were designed for 4293 ORFs from the completed genomic sequence of Aeromonas salmonicida A449 which comprises 4413 ORFs on one chromosome and two large plasmids. Good amplicons of length greater than 160 nt were obtained for 4237 ORFs representing >95% coverage of ORFs. All amplicons are spotted in duplicate on the microarray and sheared total genomic DNA from A. salmonicida and salmon DNA were spotted in the corners of each subarray as controls.
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