Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)		   Primates
(39)		   Rodents
(1,779)		   Mammals
(312)		   Vertebrates
(411)		   Invertebrates
(1,032)		   Plants
(2,239)		   Bacteria
(1,690)		   Viruses
(78)		   Phages
(8)		   Unclassified
(430)		   All
(11,831)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(91)		   Tiling Array
(51)		   cDNA Array
(284)		   Oligo Array
(1,084)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(3)		   HT-Seq
(165)		   Other
(12)		   All
(1,690)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9192 Nimblegen/NCSU Zymomonas mobilis array 5,850 Science Apps, L3C 2009-09-14 Nimblegen Zymomonas mobilis
Zymomonas mobilis		 cDNA Array spotted DNA/cDNA, Nimblegen/NCSU Zymomonas mobilis array,
2 GPL6431 ZMOBCombimatrixplatform 2,221 Science Apps, L3C 2008-01-28 Combimatrix/ORNL Zymomonas mobilis
Zymomonas mobilis		 Oligo Array in situ oligonucleotide, ZMOBCombimatrixplatform,
3 GPL9012 JCVI PFGRC Yersinia pseudotuberculosis 18K v5 array designed primarily based on strain PB1/+ 8,141 J. Craig Venter Institute 2009-08-10 JCVI PFGRC Yersinia pseudotuberculosis PB1/+
Yersinia pseudotuberculosis PB1/+		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pseudotuberculosis 18K v5 array designed primarily based on strain PB1/+, This set includes 7359 oligonucleotides, has 18240 spots distributed in 48 blocks.
4 GPL15095 Agilent-020412 Yersinia pseudotuberculosis YPIII gene expression array 15,744 Helmholtz Centre for Infection Research 2012-01-06 Agilent Technologies Yersinia pseudotuberculosis
Yersinia pseudotuberculosis		 Oligo Array in situ oligonucleotide, Agilent-020412 Yersinia pseudotuberculosis YPIII gene expression array, Sequences used for the design of the microarray (Agilent, 8 x 15K format) include three different 60-nt oligonucleotides for all 4172 chromosomal genes (ORFs > 30 codons) of the Y. pseudotuberculosis YPIII genome and six probes for the 92 genes of the virulence plasmid pYV of Y. pseudotuberculosis strain IP32953, and were obtained from the NCBI Genome GenBank (NC_010465.1 and NC_006153). The ORF-specific oligonucleotides were designed using the webdesign application eArray from Agilent (http://www.genomics.agilent.com).
5 GPL9013 JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain Pestoides_F 8,141 J. Craig Venter Institute 2009-08-10 JCVI PFGRC Yersinia pestis Pestoides F
Yersinia pestis Pestoides F		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain Pestoides_F, This set includes 7359 oligonucleotides, has 18240 spots distributed in 48 blocks.
6 GPL9011 JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain Nepal516 8,141 J. Craig Venter Institute 2009-08-10 JCVI PFGRC Yersinia pestis Nepal516
Yersinia pestis Nepal516		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain Nepal516, This set includes 7359 oligonucleotides, has 18240 spots distributed in 48 blocks.
7 GPL11233 Agilent-027313 Yersinia pestis CO92 tiling array [YP_tiling_244k] 243,504 J. Craig Venter Institute 2010-11-19 Agilent Technologies Yersinia pestis CO92
Yersinia pestis CO92		 Tiling Array in situ oligonucleotide, Agilent-027313 Yersinia pestis CO92 tiling array [YP_tiling_244k], Yersinia pestis tiling array. Arrays of this design have barcodes that begin with 16027313 or 2527313.. Orientation:. Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.. The ID column represents the Agilent Feature Extraction feature number.. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).. To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions..
8 GPL9009 JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain CO92 8,141 J. Craig Venter Institute 2009-08-10 JCVI PFGRC Yersinia pestis CO92
Yersinia pestis CO92		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain CO92, This set includes 7359 oligonucleotides, has 18240 spots distributed in 48 blocks.
9 GPL9007 JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain 91001 8,141 J. Craig Venter Institute 2009-08-10 JCVI PFGRC Yersinia pestis biovar Microtus str. 91001
Yersinia pestis biovar Microtus str. 91001		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain 91001, This set includes 7359 oligonucleotides, has 18240 spots distributed in 48 blocks.
10 GPL9008 JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain Antiqua 8,141 J. Craig Venter Institute 2009-08-10 JCVI PFGRC Yersinia pestis Antiqua
Yersinia pestis Antiqua		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain Antiqua, This set includes 7359 oligonucleotides, has 18240 spots distributed in 48 blocks.
11 GPL10017 WUSTL Yersinia pestis 15K array 15,360 Iowa State University 2010-02-05 Genome Sequencing Center, Washington University School of Medicine Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, WUSTL Yersinia pestis 15K array,
12 GPL10439 WUSTL Yersinia pestis 14K array 14,400 Iowa State University 2010-05-19 Washington University School of Medicine Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, WUSTL Yersinia pestis 14K array,
13 GPL2807 WUSTL Yersinia pestis 8.4k v.1 8,448 Washington Univeristy School of Medicine 2005-09-02 Washington University School of Medicine Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, WUSTL Yersinia pestis 8.4k v.1, To construct a gene-specific microarray of the Y. pestis genome, we designed 70mer oligonucleotide array elements. Predicted Y. pestis genes, encoded on both the chromosome and the three plasmids of strain CO92, were obtained from the The Wellcome Trust Sanger Institute (http://www.sanger.ac.uk/Projects/Y_pestis/). In addition genes derived from human, mouse, rat and virus were included to detect contaminating host mRNA. Oligonucleotides were designed from these sequences using ArrayOligoSelector.
14 GPL8964 JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain 91001 8,141 J. Craig Venter Institute 2009-07-31 JCVI PFGRC Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain 91001, This set includes 7359 oligonucleotides, has 19200 spots distributed in 48 blocks.
15 GPL8965 JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain Antiqua 8,141 J. Craig Venter Institute 2009-07-31 JCVI PFGRC Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain Antiqua, This set includes 7359 oligonucleotides, has 19200 spots distributed in 48 blocks.
16 GPL8966 JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain CO92 8,141 J. Craig Venter Institute 2009-07-31 JCVI PFGRC Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain CO92, This set includes 7359 oligonucleotides, has 19200 spots distributed in 48 blocks.
17 GPL8967 JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain KIM 8,141 J. Craig Venter Institute 2009-07-31 JCVI PFGRC Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain KIM, This set includes 7359 oligonucleotides, has 19200 spots distributed in 48 blocks.
18 GPL8968 JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain Nepal516 8,141 J. Craig Venter Institute 2009-07-31 JCVI PFGRC Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain Nepal516, This set includes 7359 oligonucleotides, has 19200 spots distributed in 48 blocks.
19 GPL8969 JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain PB1/+ 8,141 J. Craig Venter Institute 2009-07-31 JCVI PFGRC Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain PB1/+, This set includes 7359 oligonucleotides, has 19200 spots distributed in 48 blocks.
20 GPL8970 JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain Pestoides_F 8,141 J. Craig Venter Institute 2009-07-31 JCVI PFGRC Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 19K v4 array designed primarily based on strain Pestoides_F, This set includes 7359 oligonucleotides, has 19200 spots distributed in 48 blocks.
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