Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(74)
  Primates
(0)
  Rodents
(36)
  Mammals
(9)
  Vertebrates
(11)
  Invertebrates
(39)
  Plants
(54)
  Bacteria
(33)
  Viruses
(1)
  Phages
(0)
  Unclassified
(1)
  All
(258)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(1)
  cDNA Array
(18)
  Oligo Array
(11)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(33)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL3885 JCVI PFGRC Yersinia pestis 30K v2 array designed primarily based on strain CO92 5,329 J. Craig Venter Institute 2006-06-19 JCVI PFGRC Yersinia pestis
Yersinia pestis
Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 30K v2 array designed primarily based on strain CO92, This set includes 4826 oligonucleotides, has 30000 spots distributed in 48 blocks.
2 GPL3842 XCC 4.3K cDNA array 12,768 CapitalBio Corporation 2006-06-06 CapitalBio Xanthomonas campestris pv. campestris
Xanthomonas campestris pv. campestris
cDNA Array spotted DNA/cDNA, XCC 4.3K cDNA array,
3 GPL3651 Vibrio cholerae Spotted oligonucleotides 3,997 Tufts University/HHMI 2006-04-12 Tufts New England Medical Center Expression Array Core Vibrio cholerae O1 biovar El Tor str. N16961
Vibrio cholerae O1 biovar El Tor str. N16961
Oligo Array spotted oligonucleotide, Vibrio cholerae Spotted oligonucleotides,
4 GPL3881 Streptococcus pneumoniae TIGR4/R6 v2 5,220 University of Groningen 2006-06-16 Department of Molecular Genetics, Groningen, the Netherlands Streptococcus pneumoniae
Streptococcus pneumoniae
cDNA Array spotted DNA/cDNA, Streptococcus pneumoniae TIGR4/R6 v2,
5 GPL3882 Streptococcus pneumoniae TIGR4/R6 v3 4,502 University of Groningen 2006-06-16 Department of Molecular Genetics, university of Groningen, the Netherlands Streptococcus pneumoniae
Streptococcus pneumoniae
cDNA Array spotted DNA/cDNA, Streptococcus pneumoniae TIGR4/R6 v3,
6 GPL3931 Staphylococcus_aureus_v4_GRL 8,455 Genomic Research Laboratory 2006-06-28 Agilent Staphylococcus aureus
Staphylococcus aureus
Oligo Array in situ oligonucleotide, Staphylococcus_aureus_v4_GRL, 60-mers oligonucleotide probes, in-situ synthesis on 1
7 GPL3866 TIGR Staphylococcus aureus version2 array 3,193 Austin Health 2006-06-10 The Institute for Genomic Research Staphylococcus aureus
Staphylococcus aureus
cDNA Array spotted DNA/cDNA, TIGR Staphylococcus aureus version2 array, Microarrays were constructed by The Institue for Genomic Research, Rockville, MD. They are amplicon based arrays containing all ORF's from Staphylococcus aureus COL (genbank ID CP000046), and selected ORF's from Staphylococcus aureus MW2 (genbank ID BA000033), N315 (Genbank ID BA000018) and Mu50 (Genbank ID BA000017). All genes are spotted in triplicate, including control spots (40 amplicons and 500 70-mers from A. thaliana).
8 GPL3788 STv6_MMCC 5,776 Vaccine Research Institute of San Diego 2006-05-21 Sidney Kimmel Cancer Center Salmonella enterica
Salmonella enterica
cDNA Array spotted DNA/cDNA, STv6_MMCC, purified PCR products amplified from Salmonella genomes spotted in 50% DMSO
9 GPL3786 SKCC Salmonella 380K tiling array 382,864 Vaccine Research Institute of San Diego 2006-05-19 NimbleGen Salmonella
Salmonella
Tiling Array in situ oligonucleotide, SKCC Salmonella 380K tiling array, This set includes 382864 46~50mer oligonucleotides, mostly 50-mers. The probes were designed based on Salmonella typhimurium LT2 (NC_003197.1) genome, with a moving window of about 12 bases.
10 GPL3961 Genomic Research Laboratory Rickettsia conorii 0.7 k 768 Genomic Research Laboratory 2006-06-30 Unité des Rickettsies, CNRS-UMR6020, IFR48, Faculté de Médecine, 27, Bd Jean Moulin, Marseille, France Rickettsia conorii
Rickettsia conorii
cDNA Array spotted DNA/cDNA, Genomic Research Laboratory Rickettsia conorii 0.7 k,
11 GPL3953 Rhodopseudomonas palustris Affymetrix GeneChip 8,005 University of Washington 2006-06-29 Affymetrix Rhodopseudomonas palustris
Rhodopseudomonas palustris
GeneChip in situ oligonucleotide, Rhodopseudomonas palustris Affymetrix GeneChip,
12 GPL3954 Affymetrix Rhodopseudomonas palustris GeneChip 2 4,816 University of Washington 2006-06-29 Affymetrix Rhodopseudomonas palustris
Rhodopseudomonas palustris
GeneChip in situ oligonucleotide, Affymetrix Rhodopseudomonas palustris GeneChip 2,
13 GPL3918 MERH03-S1-0002 (Rhodococcus sp. RHA1 22K) 22,080 University of British Columbia 2006-06-23 The Microarray Facility of the Prostate Centre at Vancouver General Hospital Rhodococcus jostii RHA1
Rhodococcus jostii RHA1
Oligo Array spotted oligonucleotide, MERH03-S1-0002 (Rhodococcus sp. RHA1 22K),
14 GPL3926 Pfu gamma array v1.0 9,216 University of Maryland 2006-06-26 Todd Lowe UCSF Pyrococcus furiosus
Pyrococcus furiosus
cDNA Array spotted DNA/cDNA, Pfu gamma array v1.0,
15 GPL3782 INSA Lactococcus lactis IL1403 (lot de PCR n°1) 4,106 Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés 2006-05-18 Eurogentec/Biochips Platform INSA Toulouse France Lactococcus lactis
Lactococcus lactis
cDNA Array spotted DNA/cDNA, INSA Lactococcus lactis IL1403 (lot de PCR n°1), nylon membranes positively charged 8*12 cm
16 GPL3739 ISB Halobacterium Spotted Microarray 10,752 Institute for Systems Biology 2006-05-10 Institute for Systems Biology Halobacterium sp. NRC-1
Halobacterium sp. NRC-1
Oligo Array spotted oligonucleotide, ISB Halobacterium Spotted Microarray,
17 GPL3870 Nimblegen Haemophilus influenzae Rd KW20 array 2236 4,971 University of Oklahoma Health Sciences Center 2006-06-12 Nimblegen Haemophilus influenzae Rd KW20
Haemophilus influenzae Rd KW20
Oligo Array in situ oligonucleotide, Nimblegen Haemophilus influenzae Rd KW20 array 2236,
18 GPL3935 Escherichia coli O157:H7 virulence and regulatory array 612 MBRI 2006-06-28 custom Escherichia coli O157:H7 str. EDL933
Escherichia coli O157:H7 str. EDL933
Oligo Array spotted oligonucleotide, Escherichia coli O157:H7 virulence and regulatory array, epoxide coated
19 GPL3925 SLVG E.coli_Shigella 6.5K array 6,528 Chinese center for disease control and prevention 2006-06-26 State key laboratory for molecular virology and genetic engineering,China CDC Escherichia coli K-12,Shigella flexneri 2a str. 301,Shigella dysenteriae Sd197,Shigella boydii Sb227,Shigella sonnei Ss046
Escherichia coli K-12,Shigella flexneri 2a str. 301,Shigella dysenteriae Sd197,Shigella boydii Sb227,Shigella sonnei Ss046
cDNA Array spotted DNA/cDNA, SLVG E.coli_Shigella 6.5K array, A microarray with 6528 spot features. Tip configuration: Standard 16-tip steel pin Columns per Sector: 24 Rows per Sector: 17 Column spacing: 180 um Row spacing: 180 um
20 GPL3680 CBS - 7 genomes E. coli microarray 271,693 DTU 2006-04-19 Affymetrix Escherichia coli
Escherichia coli
GeneChip in situ oligonucleotide, CBS - 7 genomes E. coli microarray, Microarray design covers 7 E. coli strains: O157:H7 EDL933, O157:H7 RIMD0509952, K-12 MG1655, K-12 W3110, CFT073, O42 and E2348/69
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