Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)
  Primates
(199)
  Rodents
(12,016)
  Mammals
(754)
  Vertebrates
(1,115)
  Invertebrates
(3,796)
  Plants
(6,479)
  Bacteria
(2,920)
  Viruses
(51)
  Phages
(4)
  Unclassified
(249)
  All
(45,516)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(1,413)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(5)
  HT-Seq
(0)
  Other
(11)
  All
(2,920)
 
1   |   2   |   3   |   4   |   5      »      [146]
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Transcriptome analysis of Shewanella oneidensis MR-1 in response to cold shock (GSE4489) [cDNA Array] ORNL Shewanella oneidensis 11.5k array (GPL3253) Zhejiang University 2006-03-16 Shewanella oneidensis MR-1
Shewanella oneidensis MR-1
691,200
(11,520 x 60)
60 by_platform
by_series
2 Response of Shewanella oneidensis wild type and arcA mutant strains to H2O2 (GSE31053) [cDNA Array] ORNL Shewanella oneidensis 11.5k array (GPL3253) Zhejiang University 2011-07-29 Shewanella oneidensis
Shewanella oneidensis
92,160
(11,520 x 8)
8 by_platform
by_series
3 ArcA deletion mutant/MR-1 (GSE7973) [cDNA Array] ORNL Shewanella oneidensis 11.5k array (GPL3253) Zhejiang University 2007-06-01 Shewanella oneidensis
Shewanella oneidensis
92,160
(11,520 x 8)
8 by_platform
by_series
4 MR-1 nitrate sample to fumarate sample (GSE11198) [cDNA Array] ORNL Shewanella oneidensis 11.5k array (GPL3253) Zhejiang University 2008-04-16 Shewanella oneidensis MR-1
Shewanella oneidensis MR-1
34,560
(11,520 x 3)
3 by_platform
by_series
5 Deinococcus radiodurans R1: wildtype strains vs. oxyR disruption strains (GSE9636) [cDNA Array] Deinococcus radiodurans 6K cDNA microarray (NC_001263, NC_001264, NC_000958, NC_000959) (GPL6124) Zhejiang University 2007-11-16 Deinococcus radiodurans
Deinococcus radiodurans
27,648
(6,912 x 4)
4 by_platform
by_series
6 Deinococcus radiodurans R1: wildtype strains vs. DR0199-deletion strains (GSE33758) [Oligo Array] Institute of Nuclear-Agricultural Sciences Deinococcus radiodurans 3166 array [condensed version] (GPL9466) Zhejiang University 2011-11-16 Deinococcus radiodurans
Deinococcus radiodurans
9,498
(3,166 x 3)
3 by_platform
by_series
7 Deinococcus radiodurans R1: rpob 9-bp-deletion vs. wild-type (GSE18661) [Oligo Array] Institute of Nuclear-Agricultural Sciences Deinococcus radiodurans 3166 array [condensed version] (GPL9466) Zhejiang University 2009-10-21 Deinococcus radiodurans
Deinococcus radiodurans
6,332
(3,166 x 2)
2 by_platform
by_series
8 Deinococcus radiodurans R1: wildtype strains vs. DR1790-deletion strains (GSE22628) [Oligo Array] Institute of Nuclear-Agricultural Sciences Deinococcus radiodurans 3166 array [condensed version] (GPL9466) Zhejiang University 2010-06-29 Deinococcus radiodurans
Deinococcus radiodurans
3,166
(3,166 x 1)
1 by_platform
by_series
9 Effects of vitamin B12 on the gene expression of PAO1 under anaerobic growth conditions (GSE34836) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) Yonsei University College of Medicine 2012-01-04 Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa PAO1
11,800
(5,900 x 2)
2 by_platform
by_series
10 The effect of IAN on E. coli O157:H7 EHEC biofilm formation (GSE19842) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) Yeungnam University 2010-01-12 Escherichia coli
Escherichia coli
20,416
(10,208 x 2)
2 by_platform
by_series
11 Mechanisms of Biofilm Formation in Two Escherichia coli O157:H7 Lineages (GSE19953) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) Yeungnam University 2010-01-19 Escherichia coli
Escherichia coli
20,416
(10,208 x 2)
2 by_platform
by_series
12 The Apple Flavonoid Phloretin Inhibits Escherichia coli O157:H7 Biofilm Formation and Ameliorates Colon Inflammation in Rat (GSE28144) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) Yeungnam University 2011-03-24 Escherichia coli
Escherichia coli
20,416
(10,208 x 2)
2 by_platform
by_series
13 Honeys Inhibit Virulence and Biofilm Formation in Enterohaemorrhagic Escherichia coli O157:H7, but Do not Harm Commensal Escherichia coli K-12 Biofilm (GSE28193) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) Yeungnam University 2011-03-26 Escherichia coli
Escherichia coli
20,416
(10,208 x 2)
2 by_platform
by_series
14 Indole-3-Acetaldehyde Inhibits Escherichia coli O157:H7 Biofilm Formation by Reducing Curli Formation (GSE30424) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) Yeungnam University 2011-07-06 Escherichia coli
Escherichia coli
20,416
(10,208 x 2)
2 by_platform
by_series
15 The effect of IAN on P. aeruginosa virulence (GSE21508) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) Yeungnam University 2010-04-25 Pseudomonas aeruginosa
Pseudomonas aeruginosa
11,800
(5,900 x 2)
2 by_platform
by_series
16 comparison of virulence factors and expression of specific genes of UPEC and APEC in vivo and in vitro (GSE11509) [cDNA Array] YZU_E.Coli_152_V1.0 (GPL6870) Yanzhou university 2008-05-20 Escherichia coli
Escherichia coli
2,016
(504 x 4)
2 2 by_platform
by_series
17 Genomic diversity of a pneumococcal clonal complex, 199 (GSE23992) [Oligo Array] JCVI PFGRC Streptococcus pneumoniae 21K v6 array designed primarily based on strain TIGR4 [full array version] (GPL10885) Yale University 2010-09-07 Streptococcus pneumoniae
Streptococcus pneumoniae
423,360
(21,168 x 20)
20 by_platform
by_series
18 Genomic diversity of a pneumococcal clonal complex, 199 (GSE23992) [Oligo Array] JCVI PFGRC Streptococcus pneumoniae 21K v7 array designed primarily based on strain TIGR4 [full array version] (GPL10886) Yale University 2010-09-07 Streptococcus pneumoniae
Streptococcus pneumoniae
42,336
(21,168 x 2)
2 by_platform
by_series
19 Gene expression of Pseudomonas aeruginosa on reverse osmosis membranes (GSE7266) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) Yale University 2007-03-14 Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa PAO1
11,800
(5,900 x 2)
2 by_platform
by_series
20 Response of Bacillus halodurans C-125 wild-type and OLE-OAP knockout cells to acute ethanol stress (GSE33303) [HT Sequencing] Illumina HiSeq 2000 (Bacillus halodurans) (GPL14803) Yale University 2011-10-27 Bacillus halodurans
Bacillus halodurans
8
(0 x 8)
8 by_platform
by_series
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