Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(630)		   Tiling Array
(81)		   cDNA Array
(676)		   Oligo Array
(1,413)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(5)		   HT-Seq
(104)		   Other
(11)		   All
(2,920)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 [E-MTAB-706] Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni (GSE30621) [HT Sequencing] Illumina Genome Analyzer (Campylobacter jejuni) (GPL13903) European Bioinformatics Institute 2011-07-12 Campylobacter jejuni
Campylobacter jejuni		 4
(0 x 4) 		4 by_platform
by_series
2 [E-MTAB-502] Citrobacter rodentium transcriptomics (Regulation) (GSE30610) [HT Sequencing] Illumina Genome Analyzer II (Citrobacter rodentium) (GPL13894) European Bioinformatics Institute 2011-07-12 Citrobacter rodentium
Citrobacter rodentium		 2
(0 x 2) 		2 by_platform
by_series
3 [E-MTAB-387] RNA sequencing in E. coli K12 (GSE24998) [HT Sequencing] Illumina Genome Analyzer II (Escherichia coli) (GPL10328) European Bioinformatics Institute 2010-10-28 Escherichia coli
Escherichia coli		 2
(0 x 2) 		2 by_platform
by_series
4 [E-MTAB-332] H-NS and Fis binding to E. coli K12 (GSE24991) [HT Sequencing] Illumina Genome Analyzer II (Escherichia coli) (GPL10328) European Bioinformatics Institute 2010-10-28 Escherichia coli
Escherichia coli		 9
(0 x 9) 		9 by_platform
by_series
5 Zymomonas mobilis oxygen stress responses (GSE10302) [Oligo Array] ZMOBCombimatrixplatform (GPL6431) Science Apps, L3C 2008-01-28 Zymomonas mobilis
Zymomonas mobilis		 53,304
(2,221 x 24) 		24 by_platform
by_series
6 Zur regulon of Neisseria meningitidis (GSE38033) [Oligo Array] Wuerzburg Neisseria meningitidis 15.4K (GPL8787) University of Wuerzburg 2012-05-17 Neisseria meningitidis
Neisseria meningitidis		 168,960
(15,360 x 11) 		11 by_platform
by_series
7 Yersinia pseudotuberculosis ymoA mutant vs. wild type YPIII (GSE35043) [Oligo Array] Agilent-020412 Yersinia pseudotuberculosis YPIII gene expression array (GPL15095) Helmholtz Centre for Infection Research 2012-01-12 Yersinia pseudotuberculosis YPIII
Yersinia pseudotuberculosis YPIII		 62,976
(15,744 x 4) 		4 by_platform
by_series
8 Y. pestis KIM6+ TraSH Microarray Analysis After Intracellular Replication (GSE33982) [Oligo Array] JCVI PFGRC Yersinia pestis 30K v2 array designed primarily based on strain KIM (GPL4199) Stony Brook University 2011-11-28 Yersinia pestis
Yersinia pestis		 21,316
(5,329 x 4) 		4 by_platform
by_series
9 Xylella fastidiosa Study on different growth media (GSE13748) [cDNA Array] UNESP Xylella fastidiosa array version 1 (GPL7554) Max-Delbruck Center for Molecular Medicine 2008-11-26 Xylella fastidiosa
Xylella fastidiosa		 1,479
(493 x 3) 		3 by_platform
by_series
10 Xylella fastidiosa 9a5c: gomesin-treated cells vs. control (GSE17605) [cDNA Array] IQ-USP Xylella fastidiosa 9.2K v2.0. (GPL9024) Universidade de São Paulo 2009-08-12 Xylella fastidiosa
Xylella fastidiosa		 92,160
(4,608 x 20) 		20 by_platform
by_series
11 Xanthomonas oryzae pv. oryzae (Indian Isolate): Wild type vs. rpfF mutant (GSE27809) [Oligo Array] Agilent-025096 Genotypic Technology designed Custom Xanthomonas oryzae 8x15k Gene Expression Profiling Microarray (GPL13231) Genotypic Technology 2011-03-07 Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae		 32,452
(8,113 x 4) 		4 by_platform
by_series
12 Xanthomonas campestris pv. campestris 8004: wild type vs. ravA (or ravS or ravR) mutant (GSE32908) [cDNA Array] CapitalBio 4.3K Xcc cDNA array (GPL14720) institute of microbiology, Chinese academy of sciences 2011-10-12 Xanthomonas campestris pv. campestris
Xanthomonas campestris pv. campestris		 84,672
(14,112 x 6) 		6 by_platform
by_series
13 Wt-ko_trxB1_Filtered bkg correc transf-norm (GSE8672) [Oligo Array] WCFS Lactobacillus plantarum 11K 60-mer array, Version 1, our ID LPAG1 (GPL4318) TI Food and Nutrition 2007-08-03 Lactobacillus plantarum
Lactobacillus plantarum		 64,842
(10,807 x 6) 		6 by_platform
by_series
14 WT vs WTmitomycinC comparison (GSE35518) [Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365) Université catholique de louvain 2012-02-02 Streptococcus thermophilus
Streptococcus thermophilus		 47,232
(15,744 x 3) 		3 by_platform
by_series
15 WT vs KO of lp_2991 comparison (GSE20515) [Oligo Array] WCFS Lactobacillus plantarum 11K 60-mer array, Version 2 (GPL9359) NIZO food research 2010-02-24 Lactobacillus plantarum WCFS1
Lactobacillus plantarum WCFS1		 21,614
(10,807 x 2) 		2 by_platform
by_series
16 WT vs KO mecA comparison (GSE28371) [Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365) Université catholique de louvain 2011-04-04 Streptococcus thermophilus
Streptococcus thermophilus		 47,232
(15,744 x 3) 		3 by_platform
by_series
17 WT vs KO hdiR comparison (GSE35517) [Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365) Université catholique de louvain 2012-02-02 Streptococcus thermophilus
Streptococcus thermophilus		 47,232
(15,744 x 3) 		3 by_platform
by_series
18 WT vs KO comX comparison (GSE28372) [Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365) Université catholique de louvain 2011-04-04 Streptococcus thermophilus
Streptococcus thermophilus		 47,232
(15,744 x 3) 		3 by_platform
by_series
19 WT 14028 versus mutant (GSE2455) [cDNA Array] STv5B_MMCC (GPL1835) Institute of Cellular and Molecular Biology 2005-03-29 Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium		 69,312
(5,776 x 12) 		12 by_platform
by_series
20 WT (Fis+) strain (GSE7380) [GeneChip] [Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array (GPL199) University at Albany 2007-03-27 Escherichia coli
Escherichia coli		 87,744
(7,312 x 12) 		12 by_platform
by_series
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