Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(304)		   Primates
(0)		   Rodents
(246)		   Mammals
(18)		   Vertebrates
(11)		   Invertebrates
(39)		   Plants
(97)		   Bacteria
(50)		   Viruses
(0)		   Phages
(0)		   Unclassified
(3)		   All
(769)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(6)		   Tiling Array
(0)		   cDNA Array
(6)		   Oligo Array
(37)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(1)		   Other
(0)		   All
(50)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Transcritptome of a revR deletion mutant during Clostridium perfringens exponential phase growth. (GSE26508) [cDNA Array] Kyushu Univ. Clostridium perfringens strain 13 DNA 7K array v1 [chromosome and extra-chromosomal plasmid] (GPL11408) Monash University 2011-01-08 Clostridium perfringens str. 13
Clostridium perfringens str. 13		 22,936
(5,734 x 4) 		4 by_platform
by_series
2 Transcriptomic comparison of serotype M1 S. pyogenes (GSE35568) [Oligo Array] JCVI PFGRC Streptococcus pyogenes 21K v2 array designed primarily based on strain MGAS5005 (GPL10822) University of Queensland 2012-02-06 Streptococcus pyogenes
Streptococcus pyogenes		 358,020
(9,945 x 36) 		36 by_platform
by_series
3 Transcriptomic and phenotypic responses of L. monocytogenes with different growth efficiencies under acidic conditions (GSE19918) [Oligo Array] University of Tasmania Listeria monocytogenes 3K (GPL5334) University of Tasmania 2010-01-15 Listeria monocytogenes
Listeria monocytogenes		 39,998
(2,857 x 14) 		14 by_platform
by_series
4 Transcriptomic analysis comparing the spontaneous acapsular strain AL1114 to the parent capsulated strain AL1115 (GSE17686) [Oligo Array] Boyce/Adler_P. multocida_Combi12K_V1.0_2008 (GPL8988) University of Queensland 2009-08-17 Pasteurella multocida
Pasteurella multocida		 75,264
(12,544 x 6) 		6 by_platform
by_series
5 Transcriptional response of Leptospira interrogans to iron limitation and characterization of putative Fur-like protein (GSE20422) [Oligo Array] AGRF Leptospira interrogans spotted oligo array (GPL10072) Monash University 2010-02-19 Leptospira interrogans
Leptospira interrogans		 101,376
(16,896 x 6) 		6 by_platform
by_series
6 Transcriptional analysis of Chlamydia trachomatis Serovar D genes under different in-vitro hormonal conditions (GSE24119) [GeneChip] [ChlpnV1a520166F] IHBI-C&T Chlamydia 2K v1.0_custom (GPL10910) Institute of Health and Biomedical Innovation (IHBI) 2010-09-14 Chlamydia trachomatis
Chlamydia trachomatis		 20,192
(1,262 x 16) 		16 by_platform
by_series
7 The RegR virulence regulon of rabbit specific enteropathogenic Escherichia coli strain E22 (GSE41093) [Oligo Array] Agilent-034214 Ecoli E22 RegA ANTISENSE (GPL16094) Walter and Eliza Hall Institute 2012-09-24 Escherichia coli E22
Escherichia coli E22		 125,952
(15,744 x 8) 		8 by_platform
by_series
8 The effect of zinc limitation on transcriptome expression in Pseudomonas protegens Pf-5 (GSE32921) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-10-12 Pseudomonas fluorescens
Pseudomonas fluorescens		 165,888
(27,648 x 6) 		6 by_platform
by_series
9 The effect of Iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5: iron(III) chloride (GSE29320) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-05-16 Pseudomonas fluorescens
Pseudomonas fluorescens		 165,888
(27,648 x 6) 		6 by_platform
by_series
10 The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5: iron(II) chloride (GSE29319) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-05-16 Pseudomonas fluorescens
Pseudomonas fluorescens		 165,888
(27,648 x 6) 		6 by_platform
by_series
11 The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5 (GSE29322) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-05-16 Pseudomonas fluorescens
Pseudomonas fluorescens		 331,776
(27,648 x 12) 		12 by_platform
by_series
12 Tannic acid treatment effect on transcriptome of Pseudomonas fluorescens Pf-5 (GSE33909) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-11-23 Pseudomonas fluorescens
Pseudomonas fluorescens		 331,776
(27,648 x 12) 		12 by_platform
by_series
13 Tannic acid (20 µg/ mL) treatment effect on transcriptome of Pseudomonas fluorescens Pf-5 (GSE33907) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-11-23 Pseudomonas fluorescens
Pseudomonas fluorescens		 165,888
(27,648 x 6) 		6 by_platform
by_series
14 Tannic acid (160 µg/ mL) treatment effect on transcriptome of Pseudomonas fluorescens Pf-5 (GSE33908) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-11-23 Pseudomonas fluorescens
Pseudomonas fluorescens		 165,888
(27,648 x 6) 		6 by_platform
by_series
15 Staphylococcus aureus walKR mutants (TPS3130 and TPS3190) vs. parent strains (JKD6009 and JKD6004) (GSE29157) [Oligo Array] JCVI PFGRC Staphylococcus aureus 16K v9 array designed primarily based on strain N315 (GPL10592) Austin Health 2011-05-09 Staphylococcus aureus
Staphylococcus aureus		 30,522
(5,087 x 6) 		6 by_platform
by_series
16 Staphylococcus aureus small colony variant (JKD6229) vs. parent strain (JKD6210) (GSE20957) [Oligo Array] JCVI PFGRC Staphylococcus aureus 22K v6 array designed primarily based on strain Mu50 (all spots) (GPL10229) Austin Health 2010-03-18 Staphylococcus aureus
Staphylococcus aureus		 77,352
(19,338 x 4) 		4 by_platform
by_series
17 PtrA is required for coordinate regulation of gene expression during phosphate depletion in a marine Synechococcus (GSE18511) [Oligo Array] JCVI Synechococcus sp. WH 8102 19K v2.0 (GPL7449) Macquarie University 2009-10-09 Synechococcus sp. WH 8102
Synechococcus sp. WH 8102		 76,800
(19,200 x 4) 		4 by_platform
by_series
18 PtrA is required for coordinate regulation of gene expression during phosphate depletion in a marine Synechococcus (GSE18511) [Oligo Array] JCVI Synechococcus sp. WH 8102 19K v1.0 (GPL7448) Macquarie University 2009-10-09 Synechococcus sp. WH 8102
Synechococcus sp. WH 8102		 38,400
(19,200 x 2) 		2 by_platform
by_series
19 Pseudomonas aeruginosa gene expression in artificial sputum medium using a broad capture array designated the PANarray (GSE28152) [cDNA Array] University of Sydney CombiMatrix 12K PANarray (GPL13324) University of Sydney 2011-03-24 Pseudomonas aeruginosa
Pseudomonas aeruginosa		 82,008
(10,251 x 8) 		8 by_platform
by_series
20 Porphyromonas gingivalis W50 Heme-excess vs Heme-limitation (GSE13375) [Oligo Array] CRC-OHS Porphyromonas gingivalis W83 1977v2 (GPL7531) The University of Melbourne 2008-10-28 Porphyromonas gingivalis
Porphyromonas gingivalis		 16,128
(2,688 x 6) 		6 by_platform
by_series
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