Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,355)		   Tiling Array
(676)		   cDNA Array
(10,532)		   Oligo Array
(19,682)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(729)		   Other
(57)		   All
(39,082)		  
  brain
(118)		   blood
(706)		   connective
(170)		   reproductive
(108)		   muscular
(90)		   digestive
(772)		   liver
(78)		   lung
(251)		   urinary
(19)		   endo/exo-crine
(204)		   embryo
(25)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(217)		   unclassified
(36,324)		   all
(39,082)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1003214 RNAP_CS_Exp1 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Log phase Mtb H37Rv cells title:RNAP_CS_Exp1 description:Chromatin IP against RNAP
2 GSM1003215 RNAP_CS_Exp2 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Log phase Mtb H37Rv cells title:RNAP_CS_Exp2 description:Chromatin IP against RNAP
3 GSM1003216 RNAP_CS_Stat1 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Stat phase Mtb H37Rv cells title:RNAP_CS_Stat1 description:Chromatin IP against RNAP
4 GSM1003217 RNAP_CS_Stat2 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Stat phase Mtb H37Rv cells title:RNAP_CS_Stat2 description:Chromatin IP against RNAP
5 GSM1003218 NusA_CS_Exp1 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Log phase Mtb H37Rv cells title:NusA_CS_Exp1 description:Chromatin IP against NusA
6 GSM1003219 NusA_CS_Exp2 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Log phase Mtb H37Rv cells title:NusA_CS_Exp2 description:Chromatin IP against NusA
7 GSM1003220 NusA_CS_Stat1 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Stat phase Mtb H37Rv cells title:NusA_CS_Stat1 description:Chromatin IP against NusA
8 GSM1003221 NusA_CS_Stat2 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Stat phase Mtb H37Rv cells title:NusA_CS_Stat2 description:Chromatin IP against NusA
9 GSM1003222 Input_DNA1 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Log phase Mtb H37Rv cells title:Input_DNA1 description:input DNA
10 GSM1003223 Input_DNA2 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Stat phase Mtb H37Rv cells title:Input_DNA2 description:input DNA
11 GSM1003224 RNA-Seq_E1 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Log phase Mtb H37Rv cells title:RNA-Seq_E1 description:RNAseq in Exponential phase
12 GSM1003225 RNA-Seq_E2 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Log phase Mtb H37Rv cells title:RNA-Seq_E2 description:RNAseq in Exponential phase
13 GSM1003226 RNA-Seq_S1 0 EPFL 2012-09-12 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 unclassified source_name:Stationary phase Mtb H37Rv cells title:RNA-Seq_S1 description:RNAseq in Stationary phase
14 GSM1006932 Mycoplasma penetrans 0 International Institute of Molecular and Cell Biology 2012-09-20 [HT Sequencing] Illumina MiSeq (Mycoplasma penetrans) (GPL16084) SRA Mycoplasma penetrans
Mycoplasma penetrans		 unclassified source_name:genomic DNA title:Mycoplasma penetrans
15 GSM1006933 Escherichia coli control 0 International Institute of Molecular and Cell Biology 2012-09-20 [HT Sequencing] Illumina MiSeq (Escherichia coli) (GPL16085) SRA Escherichia coli
Escherichia coli		 unclassified source_name:genomic DNA title:Escherichia coli control
16 GSM1006934 Escherichia coli M.MpeI methylated in vitro methylated genomic DNA 0 International Institute of Molecular and Cell Biology 2012-09-20 [HT Sequencing] Illumina MiSeq (Escherichia coli) (GPL16085) SRA Escherichia coli
Escherichia coli		 unclassified source_name:genomic DNA title:Escherichia coli M.MpeI methylated in vitro methylated genomic DNA
17 GSM1011518 WT_rep1 0 The Catholic University of Korea 2012-09-30 [HT Sequencing] Illumina Genome Analyzer II (Corynebacterium glutamicum ATCC 13032) (GPL16168) SRA Corynebacterium glutamicum ATCC 13032
Corynebacterium glutamicum ATCC 13032		 unclassified source_name:bacterial cells title:WT_rep1
18 GSM1011519 WT_rep2 0 The Catholic University of Korea 2012-09-30 [HT Sequencing] Illumina Genome Analyzer II (Corynebacterium glutamicum ATCC 13032) (GPL16168) SRA Corynebacterium glutamicum ATCC 13032
Corynebacterium glutamicum ATCC 13032		 unclassified source_name:bacterial cells title:WT_rep2
19 GSM1011520 HA+H2O2_rep1 0 The Catholic University of Korea 2012-09-30 [HT Sequencing] Illumina Genome Analyzer II (Corynebacterium glutamicum ATCC 13032) (GPL16168) SRA Corynebacterium glutamicum ATCC 13032
Corynebacterium glutamicum ATCC 13032		 unclassified source_name:bacterial cells title:HA+H2O2_rep1
20 GSM1013482 MV-rep1 0 University of helsinki 2012-10-02 [Oligo Array] Agilent-022099 Custom Leuconostoc gasicomitatum LMG 18811 oligoarray 2.1 (GPL16127) RNA Leuconostoc gasicomitatum LMG 18811
Leuconostoc gasicomitatum LMG 18811		 unclassified source_name:cydB mutant wild type title:MV-rep1 description:Biological replicate 1 of 2, L. gasicomitatum type strain and cydB mutant grown without heme
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