Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,355)		   Tiling Array
(676)		   cDNA Array
(10,532)		   Oligo Array
(19,682)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(729)		   Other
(57)		   All
(39,082)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(0)		   all
(39,082)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1099266 LB 2,023,636 University of California 2013-03-15 [Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797) RNA Shewanella oneidensis MR-1
Shewanella oneidensis MR-1		 unclassified source_name:MR-1 grown in rich LB medium title:LB description:cDNA
2 GSM1099267 DMSO 2,023,636 University of California 2013-03-15 [Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797) RNA Shewanella oneidensis MR-1
Shewanella oneidensis MR-1		 unclassified source_name:MR-1 grown in minimal lactate medium anaerobically with dimethyl sulfoxide as the electron acceptor title:DMSO description:cDNA
3 GSM1099268 FE 2,023,636 University of California 2013-03-15 [Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797) RNA Shewanella oneidensis MR-1
Shewanella oneidensis MR-1		 unclassified source_name:MR-1 grown in minimal lactate medium anaerobically with iron (III) citrate as the electron acceptor title:FE description:cDNA
4 GSM1099269 HS 2,023,636 University of California 2013-03-15 [Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797) RNA Shewanella oneidensis MR-1
Shewanella oneidensis MR-1		 unclassified source_name:MR-1 heat shocked for 10 minutes at 42 oC. title:HS description:cDNA
5 GSM1099270 Genomic 2,023,636 University of California 2013-03-15 [Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] (GPL16797) genomic Shewanella oneidensis MR-1
Shewanella oneidensis MR-1		 unclassified source_name:MR-1 grown in rich LB medium title:Genomic
6 GSM731851 rich media DvH LS 2,003,627 Lawrence Berkeley Lab 2011-05-26 [Oligo Array] NimbleGen Desulfovibrio vulgaris Hildenborough 2004K (GPL13654) RNA Desulfovibrio vulgaris str. Hildenborough
Desulfovibrio vulgaris str. Hildenborough		 unclassified source_name:DvH grown in lactate/sulfate media supplemented with yeast extract (LS) title:rich media DvH LS description:Mid-log phase DvH in LS, 2 biological replicates
7 GSM731852 minimal media DvH LS4D 2,003,627 Lawrence Berkeley Lab 2011-05-26 [Oligo Array] NimbleGen Desulfovibrio vulgaris Hildenborough 2004K (GPL13654) RNA Desulfovibrio vulgaris str. Hildenborough
Desulfovibrio vulgaris str. Hildenborough		 unclassified source_name:DvH grown in minimal media title:minimal media DvH LS4D description:Mid-log phase DvH in LS4D, 1 biological replicate
8 GSM969798 MM 1,937,190 Lawrence Berkeley Lab 2012-07-18 [Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling [NimbleGen_MR1_2005K_1] (GPL15823) RNA Shewanella oneidensis MR-1
Shewanella oneidensis MR-1		 unclassified source_name:Mid-log-phase MR-1 in minimal lactate medium title:MM description:mRNA hyb
9 GSM969799 genomic control 1,937,190 Lawrence Berkeley Lab 2012-07-18 [Tiling Array] Custom NimbleGen Shewanella oneidensis MR-1 Tiling [NimbleGen_MR1_2005K_1] (GPL15823) genomic Shewanella oneidensis MR-1
Shewanella oneidensis MR-1		 unclassified source_name:Mid-log-phase MR-1 in minimal lactate medium title:genomic control description:genomic DNA hyb
10 GSM724228 continuous light T = 60 hours 458,333 Harvard University 2011-05-15 [Oligo Array] Agilent Array ID 022715 (forward strand) and Array ID 022716 (reverse strand) (GPL13535) RNA Synechococcus elongatus PCC 7942
Synechococcus elongatus PCC 7942		 unclassified source_name:continuous light T = 60 hours average of T = 24 through 80 in 4 hour intervals title:continuous light T = 60 hours
11 GSM724229 continuous light T = 68 hours 458,333 Harvard University 2011-05-15 [Oligo Array] Agilent Array ID 022715 (forward strand) and Array ID 022716 (reverse strand) (GPL13535) RNA Synechococcus elongatus PCC 7942
Synechococcus elongatus PCC 7942		 unclassified source_name:continuous light T = 68 hours average of T = 24 through 80 in 4 hour intervals title:continuous light T = 68 hours
12 GSM724230 continuous light T = 72 hours 458,333 Harvard University 2011-05-15 [Oligo Array] Agilent Array ID 022715 (forward strand) and Array ID 022716 (reverse strand) (GPL13535) RNA Synechococcus elongatus PCC 7942
Synechococcus elongatus PCC 7942		 unclassified source_name:continuous light T = 72 hours average of T = 24 through 80 in 4 hour intervals title:continuous light T = 72 hours
13 GSM724231 continuous light T = 80 hours 458,333 Harvard University 2011-05-15 [Oligo Array] Agilent Array ID 022715 (forward strand) and Array ID 022716 (reverse strand) (GPL13535) RNA Synechococcus elongatus PCC 7942
Synechococcus elongatus PCC 7942		 unclassified source_name:continuous light T = 80 hours average of T = 24 through 80 in 4 hour intervals title:continuous light T = 80 hours
14 GSM635865 BAPHK_cDNA1 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
15 GSM635866 BAPHK_cDNA2 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
16 GSM635883 BAPHK_cDNA3 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
17 GSM635902 BAPHK_R15 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
18 GSM635903 BAPHK_R16 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
19 GSM636914 cDNA_DNAref1 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
20 GSM636915 cDNA_DNAref2 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
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