Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(6,100)

Primates
(0)

Bacteria
(343)

Viruses
(0)

Phages
(0)

Unclassified
(46)

All
(8,303)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(23)

Tiling Array
(8)

cDNA Array
(0)

Oligo Array
(312)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(0)

Other
(0)

All
(343)

brain
(0)

blood
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(2)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(3)

unclassified
(338)

all
(343)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM462173	Wildtype late exponential	382,202	KULeuven	2009-10-15	[Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409)	RNA	Rhizobium etli CFN 42	unclassified	source_name:Wildtype R. etli CFN42 at OD600 = 0.7 title:Wildtype late exponential description:Wild-type R. etli CFN42 was grown at 30Ã‹Å¡C in acid minimal salts medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Samples were taken at OD600 = 0.7, representing late exponential phase.
2	GSM462178	Wildtype early exponential	382,202	KULeuven	2009-10-15	[Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409)	RNA	Rhizobium etli CFN 42	unclassified	source_name:Wildtype R. etli CFN42 at OD600 = 0.3 title:Wildtype early exponential description:Wild-type R. etli CFN42 was grown at 30Ã‹Å¡C in acid minimal salts medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Samples were taken at OD600 = 0.3, representing early exponential phase.
3	GSM462180	Wildtype early stationary	382,202	KULeuven	2009-10-15	[Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409)	RNA	Rhizobium etli CFN 42	unclassified	source_name:Wildtype R. etli CFN42 6 hours after reaching the maximum OD title:Wildtype early stationary description:Wild-type R. etli CFN42 was grown at 30Ã‹Å¡C in acid minimal salts medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Samples were taken 6 hours after reaching the maximum OD, representing early stationary phase.
4	GSM462184	Bacteroids two weeks	382,202	KULeuven	2009-10-15	[Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409)	RNA	Rhizobium etli CFN 42	unclassified	source_name:Wildtype R. etli CFN42 bacteroids harvested 2 weeks after inoculation title:Bacteroids two weeks description:Common bean plants (Phaseolus vulgaris cv. Limburgse vroege) were cultivated and inoculated with wildtype R. etli CFN42. Nodules were harvested 2 weeks after inoculation and the bacteroids were purified by differential centrifugation.
5	GSM462187	Bacteroids three weeks	382,202	KULeuven	2009-10-15	[Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409)	RNA	Rhizobium etli CFN 42	unclassified	source_name:Wildtype R. etli CFN42 bacteroids harvested 3 weeks after inoculation title:Bacteroids three weeks description:R. etli CFN42 was grown at 30Ã‹Å¡C in AMS medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Bacteroid samples were obtained from nodules 3 weeks after inoculation of Common bean plants (Phaseolus vulgaris cv Limburgse vroege).
6	GSM590285	rel mutant early exponential	382,202	KULeuven	2010-09-03	[Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409)	RNA	Rhizobium etli CFN 42	unclassified	source_name:rel mutant R. etli CFN42 at OD600 = 0.3 title:rel mutant early exponential description:R. etli CFN42 rel mutant was grown at 30Ã‹Å¡C in acid minimal salts medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Samples were taken at OD600 = 0.3, representing early exponential phase.
7	GSM590286	rel mutant late exponential	382,202	KULeuven	2010-09-03	[Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409)	RNA	Rhizobium etli CFN 42	unclassified	source_name:rel mutant R. etli CFN42 at OD600 = 0.7 title:rel mutant late exponential description:R. etli CFN42 rel mutant was grown at 30Ã‹Å¡C in acid minimal salts medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Samples were taken at OD600 = 0.7, representing late exponential phase.
8	GSM590287	rel mutant early stationary	382,202	KULeuven	2010-09-03	[Tiling Array] Rhizobium etli CFN 42 385K 071203_ReCFN42JM_Tiling (GPL9409)	RNA	Rhizobium etli CFN 42	unclassified	source_name:rel mutant R. etli CFN42 at 6 hours after reaching the maximum OD title:rel mutant early stationary description:R. etli CFN42 rel mutant was grown at 30Ã‹Å¡C in acid minimal salts medium supplied with 10 mM NH4Cl and 10 mM succinate while monitoring the optical density (OD) of the culture. Samples were taken at 6 hours after reaching the maximum OD, representing early stationary phase.
9	GSM701420	WTvsKOmecA THBG replicate 1	15,744	UniversitÃƒÂ© catholique de louvain	2011-04-04	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:LMD-9WT THBG OD 0.4 KOmecA THBG OD 0.4 title:WTvsKOmecA THBG replicate 1 description:Biological replicate 1 of 2
10	GSM701421	WTvsKOmecA THBG replicate 2	15,744	UniversitÃƒÂ© catholique de louvain	2011-04-04	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:LMD-9WT THBG OD 0.4 KOmecA THBG OD 0.4 title:WTvsKOmecA THBG replicate 2 description:Biological replicate 2 of 2
11	GSM701422	WTvsKOmecA THBG replicate 3	15,744	UniversitÃƒÂ© catholique de louvain	2011-04-04	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:KOmecA THBG OD 0.4 LMD-9WT THBG OD 0.4 title:WTvsKOmecA THBG replicate 3 description:Biological replicate 2 of 2, dye swap
12	GSM701424	WTvsKOcomX CDML replicate 1	15,744	UniversitÃƒÂ© catholique de louvain	2011-04-04	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:KOcomX CDML OD 0.4 LMD-9WT CDML OD 0.4 title:WTvsKOcomX CDML replicate 1 description:Biological replicate 1 of 2
13	GSM701425	WTvsKOcomX CDML replicate 2	15,744	UniversitÃƒÂ© catholique de louvain	2011-04-04	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:KOcomX CDML OD 0.4 LMD-9WT CDML OD 0.4 title:WTvsKOcomX CDML replicate 2 description:Biological replicate 2 of 2
14	GSM701426	WTvsKOcomX CDML replicate 3	15,744	UniversitÃƒÂ© catholique de louvain	2011-04-04	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:LMD-9WT CDML OD 0.4 KOcomX CDML OD 0.4 title:WTvsKOcomX CDML replicate 3 description:Biological replicate 1 of 2, dye swap
15	GSM870034	WTvsKOhdiR CDML replicate 1	15,744	UniversitÃƒÂ© catholique de louvain	2012-02-02	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:LMD-9WT CDML OD 0.4 KOhdiR CDML OD 0.4 title:WTvsKOhdiR CDML replicate 1 description:Biological replicate 1 of 2
16	GSM870035	WTvsKOhdiR CDML replicate 2	15,744	UniversitÃƒÂ© catholique de louvain	2012-02-02	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:KOhdiR CDML OD 0.4 LMD-9WT CDML OD 0.4 title:WTvsKOhdiR CDML replicate 2 description:Biological replicate 2 of 2
17	GSM870036	WTvsKOhdiR CDML replicate 3	15,744	UniversitÃƒÂ© catholique de louvain	2012-02-02	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:KOhdiR CDML OD 0.4 LMD-9WT CDML OD 0.4 title:WTvsKOhdiR CDML replicate 3 description:Biological replicate 1 of 2, dye swap
18	GSM870037	WTvsWTmitomycinC CDML replicate 1	15,744	UniversitÃƒÂ© catholique de louvain	2012-02-02	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:LMD-9WT CDML OD 0.4 LMD-9WTmitomycinC CDML OD 0.4 title:WTvsWTmitomycinC CDML replicate 1 description:Biological replicate 1 of 2
19	GSM870038	WTvsWTmitomycinC CDML replicate 2	15,744	UniversitÃƒÂ© catholique de louvain	2012-02-02	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:LMD-9WT CDML OD 0.4 LMD-9WTmitomycinC CDML OD 0.4 title:WTvsWTmitomycinC CDML replicate 2 description:Biological replicate 2 of 2
20	GSM870039	WTvsWTmitomycinC CDML replicate 3	15,744	UniversitÃƒÂ© catholique de louvain	2012-02-02	[Oligo Array] UCL Streptococcus thermophilus 15K 60-mer array, Version 1, our ID Agilent-023342 LMD-9v2 (GPL13365)	RNA	Streptococcus thermophilus	unclassified	source_name:LMD-9WTmitomycinC CDML OD 0.4 LMD-9WT CDML OD 0.4 title:WTvsWTmitomycinC CDML replicate 3 description:Biological replicate 1 of 2, dye swap

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