Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(33,111)
  Primates
(98)
  Rodents
(9,959)
  Mammals
(839)
  Vertebrates
(3,772)
  Invertebrates
(6,275)
  Plants
(5,495)
  Bacteria
(1,430)
  Viruses
(23)
  Phages
(45)
  Unclassified
(231)
  All
(61,532)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(130)
  Tiling Array
(0)
  cDNA Array
(573)
  Oligo Array
(709)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(10)
  Other
(8)
  All
(1,430)
 
  brain
(1)
  blood
(78)
  connective
(5)
  reproductive
(3)
  muscular
(0)
  digestive
(36)
  liver
(0)
  lung
(3)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(4)
  unclassified
(1,300)
  all
(1,430)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM279137 E.coli-DH10B_nativeState_v1 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Escherichia coli
Escherichia coli
unclassified source_name:E. coli DH10B native cells title:E.coli-DH10B_nativeState_v1 description:native E.coli DH10B total RNA from 1ml of 20hr bacterial culture. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
2 GSM279139 Hinfluenzae RNA - native state - v1.0 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Haemophilus influenzae
Haemophilus influenzae
unclassified source_name:Haemophilus influenzae native cells title:Hinfluenzae RNA - native state - v1.0 description:Haemophilus influenzae native cells - RNA extract. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
3 GSM279144 Pseudomonas aeruginosa native cells - RNA extract 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:Pseudomonas aeruginosa native cells title:Pseudomonas aeruginosa native cells - RNA extract description:Pseudomonas aeruginosa native cells - RNA extract. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
4 GSM279149 E.coli-DH10B_H.influenzae-cloneQtransformed_v1 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Escherichia coli
Escherichia coli
unclassified source_name:E. coli DH10B transformed with H. influenzae clone Q title:E.coli-DH10B_H.influenzae-cloneQtransformed_v1 description:E.coli DH10B transformed with H.influenzae clone Q - total RNA from 1ml of 20hr bacterial culture. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
5 GSM279154 E.coli-DH10B_H.influenzae-cloneS-transformed_v1 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Escherichia coli
Escherichia coli
unclassified source_name:E. coli DH10B transformed with H. influenzae clone S title:E.coli-DH10B_H.influenzae-cloneS-transformed_v1 description:E.coli DH10B transformed with H.influenzae clone S - total RNA from 1ml of 20hr bacterial culture. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
6 GSM279160 E.coli-DH10B_P.aeruginosa-cloneE4-transformed_v1 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Escherichia coli
Escherichia coli
unclassified source_name:E. coli DH10B transformed with P. aeruginosa clone E4 title:E.coli-DH10B_P.aeruginosa-cloneE4-transformed_v1 description:E.coli DH10B transformed with P.aeruginosa clone E4 - total RNA from 1ml of 20hr bacterial culture. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
7 GSM279161 E.coli-DH10B_P.aeruginosa-cloneE5-transformed_v1 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Escherichia coli
Escherichia coli
unclassified source_name:E. coli DH10B transformed with P. aeruginosa clone E5 title:E.coli-DH10B_P.aeruginosa-cloneE5-transformed_v1 description:E.coli DH10B transformed with P.aeruginosa clone E5 - total RNA from 1ml of 20hr bacterial culture. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
8 GSM279162 E.coli-DH10B_P.aeruginosa-cloneE6-transformed_v1 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Escherichia coli
Escherichia coli
unclassified source_name:E. coli DH10B transformed with P. aeruginosa clone E6 title:E.coli-DH10B_P.aeruginosa-cloneE6-transformed_v1 description:E.coli DH10B transformed with P.aeruginosa clone E6 - total RNA from 1ml of 20hr bacterial culture. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
9 GSM279163 E.coli-DH10B_H.influenzae-Pooled BAC clones from tiling path-transformed individually_v1 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Escherichia coli
Escherichia coli
unclassified source_name:E. coli DH10B transformed with all H.influenzae clones from a BAC tiling path title:E.coli-DH10B_H.influenzae-Pooled BAC clones from tiling path-transformed individually_v1 description:E.coli DH10B transformed with all H.influenzae clones from a BAC tiling path - total pooled RNA =~20 ug. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
10 GSM279164 E.coli-DH10B_Human-BAC clone P8 transformed_v1 339,153 BC Cancer Agency 2008-04-03 [Oligo Array] BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 (GPL6680) RNA Escherichia coli
Escherichia coli
unclassified source_name:E. coli DH10B transformed with Human clone P8 title:E.coli-DH10B_Human-BAC clone P8 transformed_v1 description:E.coli DH10B transformed with Human clone P8 - total RNA from 1ml of 20hr bacterial culture. All array processing by NimbleGen, Inc. See www.nimblegen.com for details.
11 GSM463387 Mycobacterium smegmatis 240,971 University of Toronto 2009-10-20 [Oligo Array] Mycobacterium smegmatis MC2 155 241K Whole Genome Tilling Array (GPL9468) genomic Mycobacterium smegmatis
Mycobacterium smegmatis
unclassified source_name:M. smegmatis MS8444 grown in vitro to OD 0.8-1.0 title:Mycobacterium smegmatis description:n/a
12 GSM463378 Mycobacterium tuberculosis 240,851 University of Toronto 2009-10-20 [Oligo Array] Mycobacterium tuberculosis H37Rv 241K Whole Genome Tilling Array (GPL9467) genomic Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
unclassified source_name:M. tb H37Rv grown in vitro to OD 0.8-1.0 title:Mycobacterium tuberculosis description:n/a
13 GSM506607 SL1344_LPM_1 43,452 McMaster University 2010-02-04 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) genomic Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
unclassified source_name:SL1344 ChIP DNA isolated from LPM condition SL1344 sheared genomic DNA isolated from LPM condition (input control) title:SL1344_LPM_1 description:0181__251939910001_S01_CGH-v4_95_Feb07_1_1
14 GSM506608 SL1344_LPM_2 43,452 McMaster University 2010-02-04 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) genomic Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
unclassified source_name:SL1344 ChIP DNA isolated from LPM condition SL1344 sheared genomic DNA isolated from LPM condition (input control) title:SL1344_LPM_2 description:0181__251939910001_S01_CGH-v4_95_Feb07_1_2
15 GSM506609 SL1344_LPM_3 43,452 McMaster University 2010-02-04 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) genomic Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
unclassified source_name:SL1344 ChIP DNA isolated from LPM condition SL1344 sheared genomic DNA isolated from LPM condition (input control) title:SL1344_LPM_3 description:0181__251939910001_S01_CGH-v4_95_Feb07_1_3
16 GSM506610 SL1344_LB_1 43,452 McMaster University 2010-02-04 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) genomic Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
unclassified source_name:SL1344 ChIP DNA isolated from LB condition SL1344 sheared genomic DNA isolated from LB condition (input control) title:SL1344_LB_1 description:0181__251939910001_S01_CGH-v4_95_Feb07_1_4
17 GSM119454 Ethylbenzene 1stEtcy5Pycy3 22,080 University of British Columbia 2006-07-09 [Oligo Array] MERH03-S1-0002 (Rhodococcus sp. RHA1 22K) (GPL3918) RNA Rhodococcus jostii RHA1
Rhodococcus jostii RHA1
unclassified source_name:experiment control title:Ethylbenzene 1stEtcy5Pycy3 description:ehtylbenze vs. pyruvate
18 GSM119455 Ethylbenzene 2ndEtcy3Pycy5 22,080 University of British Columbia 2006-07-09 [Oligo Array] MERH03-S1-0002 (Rhodococcus sp. RHA1 22K) (GPL3918) RNA Rhodococcus jostii RHA1
Rhodococcus jostii RHA1
unclassified source_name:experiment control title:Ethylbenzene 2ndEtcy3Pycy5 description:ehtylbenze vs. pyruvate
19 GSM119456 Ethylbenzene 3rdEtcy3Pycy5 22,080 University of British Columbia 2006-07-09 [Oligo Array] MERH03-S1-0002 (Rhodococcus sp. RHA1 22K) (GPL3918) RNA Rhodococcus jostii RHA1
Rhodococcus jostii RHA1
unclassified source_name:experiment control title:Ethylbenzene 3rdEtcy3Pycy5 description:ehtylbenze vs. pyruvate
20 GSM119457 Biphenyl 1stBicy5Pycy3 22,080 University of British Columbia 2006-07-09 [Oligo Array] MERH03-S1-0002 (Rhodococcus sp. RHA1 22K) (GPL3918) RNA Rhodococcus jostii RHA1
Rhodococcus jostii RHA1
unclassified source_name:experiment control title:Biphenyl 1stBicy5Pycy3 description:biphenyl vs. pyruvate
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