Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(5,267)
  Primates
(0)
  Rodents
(820)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(854)
  Bacteria
(0)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(7,359)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(28)
  Tiling Array
(0)
  cDNA Array
(48)
  Oligo Array
(132)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(13)
  Other
(0)
  All
(0)
 
  brain
(69)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(141)
  all
(0)
 
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM139020 Mtb late-log phase rep2 22,080 National Institute of Agricultural Biotechnology 2006-10-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis
Mycobacterium tuberculosis
unclassified source_name:Reference signal, M. tuberculosis H37Rv, mid-log, OD=0.65 Sample signal, M. tuberculosis H37Rv, late-log, OD=1.18 title:Mtb late-log phase rep2 description:The array hybridization was performed to compare general gene expression change between an exponential growth phase and late-log phase. Wild-type Mtb cells were inoculated and grown until OD~0.5, which is chosen as a reference exponential growth stage. Samples were prepared after further growth until the OD values doubles in teh same medium as was in the reference cells.
2 GSM139033 Mtb late-log phase rep3 22,080 National Institute of Agricultural Biotechnology 2006-10-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis
Mycobacterium tuberculosis
unclassified source_name:Reference signal, M. tuberculosis H37Rv, mid-log, OD=0.65 Sample signal, M. tuberculosis H37Rv, late-log, OD=1.18 title:Mtb late-log phase rep3 description:The microarray hybridization was performed to compare general gene expression changes between an exponential growth phase and late-log phase. Wild-type Mtb cells were inoculated in the complete liquid medium, and grown until OD~0.5, which is chosen as a reference exponential growth stage. Samples were prepared after further growth until the OD values doubles in the same medium as was in the reference culture.
3 GSM139034 Mtb late-log phase rep4 22,080 National Institute of Agricultural Biotechnology 2006-10-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis
Mycobacterium tuberculosis
unclassified source_name:Reference signal, M. tuberculosis H37Rv, mid-log, OD=0.64 Sample signal, M. tuberculosis H37Rv, late-log, OD=1.17 title:Mtb late-log phase rep4 description:The microarray hybridization was performed to compare general gene expression changes between an exponential growth phase and late-log phase. Wild-type Mtb cells were inoculated in the complete liquid medium, and grown until OD~0.5, which is chosen as a reference exponential growth stage. Samples were prepared after further growth until the OD values doubles in the same medium as was in the reference culture.
4 GSM139035 Mtb late-log phase rep5 22,080 National Institute of Agricultural Biotechnology 2006-10-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis
Mycobacterium tuberculosis
unclassified source_name:Reference signal, M. tuberculosis H37Rv, mid-log, OD=0.64 Sample signal, M. tuberculosis H37Rv, late-log, OD=1.17 title:Mtb late-log phase rep5 description:The microarray hybridization was performed to compare general gene expression changes between an exponential growth phase and late-log phase. Wild-type Mtb cells were inoculated in the complete liquid medium, and grown until OD~0.5, which is chosen as a reference exponential growth stage. Samples were prepared after further growth until the OD values doubles in the same medium as was in the reference culture.
5 GSM262592 F5.D01.v2.110343 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (1/3) - Technical (1/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
6 GSM262593 F5.D01.v2.110344 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (1/3) - Technical (2/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
7 GSM262594 F5.D01.v2.111488 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (1/3) - Technical (3/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
8 GSM262595 F5.D01.v2.111489 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (1/3) - Technical (4/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
9 GSM262596 F6.D01.v2.105841 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (2/3) - Technical (1/2), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
10 GSM262597 F6.D01.v2.105842 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (2/3) - Technical (2/2), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
11 GSM262598 F7.D01.v2.109564 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (3/3) - Technical (1/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
12 GSM262599 F7.D01.v2.109565 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (3/3) - Technical (2/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
13 GSM262600 F7.D01.v2.109566 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (3/3) - Technical (3/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
14 GSM262601 F7.D01.v2.109567 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 1 day Replicates; Biological (3/3) - Technical (4/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
15 GSM262602 F5.D02.v2.110345 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 2 days Replicates; Biological (1/3) - Technical (1/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
16 GSM262603 F5.D02.v2.110346 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 2 days Replicates; Biological (1/3) - Technical (2/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
17 GSM262604 F5.D02.v2.111490 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 2 days Replicates; Biological (1/3) - Technical (3/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
18 GSM262605 F5.D02.v2.111491 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 2 days Replicates; Biological (1/3) - Technical (4/4), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
19 GSM262606 F6.D02.v2.105893 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 2 days Replicates; Biological (2/3) - Technical (1/2), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).
20 GSM262607 F6.D02.v2.105898 22,080 National Institute of Agricultural Biotechnology 2008-02-05 [Oligo Array] UCF BMS M. tuberculosis ver 2.0 (GPL4388) RNA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
cerebrum Multiple stress for 2 days Replicates; Biological (2/3) - Technical (2/2), Grown in rolling bottle, Replacing head space every other day with gas mixture (O2:CO2:N2 = 5:10:85).