Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(11,235)
  Primates
(55)
  Rodents
(3,938)
  Mammals
(293)
  Vertebrates
(491)
  Invertebrates
(722)
  Plants
(2,495)
  Bacteria
(1,010)
  Viruses
(0)
  Phages
(0)
  Unclassified
(83)
  All
(20,322)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(175)
  Tiling Array
(0)
  cDNA Array
(375)
  Oligo Array
(457)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(3)
  All
(1,010)
 
  brain
(0)
  blood
(13)
  connective
(0)
  reproductive
(3)
  muscular
(0)
  digestive
(6)
  liver
(0)
  lung
(0)
  urinary
(1)
  endo/exo-crine
(0)
  embryo
(6)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(4)
  unclassified
(977)
  all
(1,010)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM252718 14028_Promoterlibmix_stable+unstable_sort2_mouseSpleen(+)_115218_1 386,350 University of California, Irvine 2007-12-20 [Oligo Array] NIMBLE_MMCCSAL01_380k (GPL5728) other Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
spleen 14028s Promoterlibmix_stable+unstable, sort2, GFP(+) in spleens of nude mouse 14028s Promoterlibmix_stable+unstable
2 GSM252719 14028_Promoterlibmix_stable+unstable_sort1_mouseTumor(+)(-)(+)_115249_2 386,350 University of California, Irvine 2007-12-20 [Oligo Array] NIMBLE_MMCCSAL01_380k (GPL5728) other Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
prostate 14028s Promoterlibmix_stable+unstable 14028s Promoterlibmix_stable+unstable, sort1: GFP(+) in human PC3 tumors of nude mouse, GFP(-) in LBAmp, GFP(+) in human PC3 tumors of nude mouse
3 GSM252720 14028_Promoterlibmix_stable+unstable_sort2_mouseTumor(+)(-)(+)_115249_1 386,350 University of California, Irvine 2007-12-20 [Oligo Array] NIMBLE_MMCCSAL01_380k (GPL5728) other Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
prostate 14028s Promoterlibmix_stable+unstable, sort2, GFP(+) in human PC3 tumors of nude mouse, GFP(-) in LBAmp, GFP(+) in human PC3 tumors of nude mouse 14028s Promoterlibmix_stable+unstable
4 GSM252721 14028_Promoterlibmix_stable+unstable_sort2_mouseTumor(+)_110997_2 386,350 University of California, Irvine 2007-12-20 [Oligo Array] NIMBLE_MMCCSAL01_380k (GPL5728) other Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
prostate 14028s Promoterlibmix_stable+unstable, GFP(+) in human PC3 tumors of nude mouse 14028s Promoterlibmix_stable+unstable
5 GSM239258 Co-hybridization of E. coli control strain O157:H7 EDL933 mRNA vs. genomic DNA #1 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli O157:H7 EDL933 title:Co-hybridization of E. coli control strain O157:H7 EDL933 mRNA vs. genomic DNA #1 description:control co-hybridization of mRNA with genomic DNA from E. coli O157:H7 EDL933
6 GSM239259 Co-hybridization of E. coli control strain O157:H7 EDL933 mRNA vs. genomic DNA #2 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli O157:H7 EDL933 title:Co-hybridization of E. coli control strain O157:H7 EDL933 mRNA vs. genomic DNA #2 description:control co-hybridization of mRNA with genomic DNA from E. coli O157:H7 EDL933
7 GSM239261 Co-hybridization of E. coli control strain O157:H7 EDL933 mRNA vs. genomic DNA #3 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli O157:H7 EDL933 title:Co-hybridization of E. coli control strain O157:H7 EDL933 mRNA vs. genomic DNA #3 description:control co-hybridization of mRNA with genomic DNA from E. coli O157:H7 EDL933
8 GSM239262 Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA #1 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli stx positive strain title:Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA #1 description:co-hybridization of mRNA with genomic DNA from an E. coli Stx positive strain
9 GSM239295 Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA #2 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli stx positive strain title:Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA #2 description:co-hybridization of mRNA with genomic DNA from an E. coli Stx positive strain
10 GSM239296 Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA #3 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli stx positive strain title:Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA #3 description:co-hybridization of mRNA with genomic DNA from an E. coli Stx positive strain
11 GSM239297 Co-hybridization of E. coli Oslo stx negative strain mRNA vs. genomic DNA #1 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli stx negative strain title:Co-hybridization of E. coli Oslo stx negative strain mRNA vs. genomic DNA #1 description:co-hybridization of mRNA with genomic DNA from an E. coli Stx positive strain
12 GSM239298 Co-hybridization of E. coli Oslo stx negative strain mRNA vs. genomic DNA #2 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli stx negative strain title:Co-hybridization of E. coli Oslo stx negative strain mRNA vs. genomic DNA #2 description:co-hybridization of mRNA with genomic DNA from an E. coli Stx positive strain
13 GSM239299 Co-hybridization of E. coli Oslo stx negative strain mRNA vs. genomic DNA #3 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli stx negative strain title:Co-hybridization of E. coli Oslo stx negative strain mRNA vs. genomic DNA #3 description:co-hybridization of mRNA with genomic DNA from an E. coli Stx positive strain
14 GSM239306 Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA - acidic conditions #1 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli stx positive strain title:Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA - acidic conditions #1 description:co-hybridization of mRNA with genomic DNA from an E. coli Stx positive strain
15 GSM239307 Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA - acidic conditions #2 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli stx positive strain title:Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA - acidic conditions #2 description:co-hybridization of mRNA with genomic DNA from an E. coli Stx positive strain
16 GSM239308 Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA - acidic conditions #3 385,979 DTU 2007-10-23 [Oligo Array] Ecoli_pangenome_CBSDTU_v1 (GPL5647) mixed Escherichia coli
Escherichia coli
unclassified source_name:E. coli stx positive strain title:Co-hybridization of E. coli Oslo stx positive strain mRNA vs. genomic DNA - acidic conditions #3 description:co-hybridization of mRNA with genomic DNA from an E. coli Stx positive strain
17 GSM239591 Wild type without glucose biological replicate 1 23,015 NIH 2007-10-24 [GeneChip] [RMLchip3a520351] Affymetrix RML Custom Pathogenic chip 3 (GPL4692) RNA Staphylococcus epidermidis
Staphylococcus epidermidis
unclassified source_name:wild type without glucose biological replicate 1 title:Wild type without glucose biological replicate 1 description:Gene expression data from_wild type without glucose biological replicate 1
18 GSM239592 Wild type without glucose biological replicate 2 23,015 NIH 2007-10-24 [GeneChip] [RMLchip3a520351] Affymetrix RML Custom Pathogenic chip 3 (GPL4692) RNA Staphylococcus epidermidis
Staphylococcus epidermidis
unclassified source_name:wild type without glucose biological replicate 2 title:Wild type without glucose biological replicate 2 description:Gene expression data from_wild type without glucose biological replicate 2
19 GSM239593 Wild type without glucose biological replicate 3 23,015 NIH 2007-10-24 [GeneChip] [RMLchip3a520351] Affymetrix RML Custom Pathogenic chip 3 (GPL4692) RNA Staphylococcus epidermidis
Staphylococcus epidermidis
unclassified source_name:wild type without glucose biological replicate 3 title:Wild type without glucose biological replicate 3 description:Gene expression data from_wild type without glucose biological replicate 3
20 GSM239594 luxS mutant without glucose biological replicate 1 23,015 NIH 2007-10-24 [GeneChip] [RMLchip3a520351] Affymetrix RML Custom Pathogenic chip 3 (GPL4692) RNA Staphylococcus epidermidis
Staphylococcus epidermidis
unclassified source_name:luxS mutant without glucose biological replicate 1 title:luxS mutant without glucose biological replicate 1 description:Gene expression data from_luxS mutant without glucose biological replicate 1
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