Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(4,712)
  Primates
(41)
  Rodents
(1,963)
  Mammals
(85)
  Vertebrates
(71)
  Invertebrates
(162)
  Plants
(837)
  Bacteria
(313)
  Viruses
(0)
  Phages
(18)
  Unclassified
(320)
  All
(8,522)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(174)
  Tiling Array
(0)
  cDNA Array
(132)
  Oligo Array
(5)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(2)
  All
(313)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(313)
  all
(313)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM48951 WTCy3/Rv2869c Cy5 no Tween #1 10,080 Sloan Kettering Institute for Cancer Research 2005-04-23 [Oligo Array] M. tuberculosis oligo (GPL1983) RNA Mycobacterium tuberculosis
Mycobacterium tuberculosis
unclassified source_name:Rv2869c mutant Wild Type M. tuberculosis title:WTCy3/Rv2869c Cy5 no Tween #1 description:o All RNA was from the indicated strain of M. tuberculosis (either wild type M. tuberculosis Erdman or the Mtb Rv2869c null mutant •RNA was isolated from logarithmic phase cultures at OD600 .3. For (+Tween) conditions, the media was Middlebrook 7H9 with 10% OADC supplement, .5% glycerol, and .05% Tween 80. For (-Tween) conditions, bacilli were transferred to identical media without Tween 80 and harvested for RNA preparation 18hours later. Protocol for preparing the hybridization extract: 15ml of liquid culture described above were collected by centrifugation at 3000g, and cell pellets frozen on dry ice. Frozen pellets were resuspended in 1ml of Trizol reagent (Invitrogen) and lysed by mechanical disruption using .7mm Zirconia beads for 3 x 1min in a Mini bead beater 8 (Biospec products) at maximum speed. The remainder of the procedure was according to the Trizol manufacturers instructions with the addition of the optional high salt precipitation step. RNA was subsequently cleaned using Qiagen RNAeasy columns according ot the manufacturers RNA cleanup protocol. Labeling protocol(s). 5-7.5micrograms of total RNA was labeled using the Fairplay microrray labeling kit (Stratagene) with substitution of Random Hexamer primers. Aminoallyl labeled CDNA was coupled to Cy3/Cy5 using Post labeling reactive dye packs (Amersham). Excess dye was removed using Qiaquick nucleotide removal columns according to the manufacturer’s instructions.
2 GSM49626 1_GLC_FRU 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, glucose L. acidophilus, fructose title:1_GLC_FRU description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
3 GSM49627 2_SUC_GLC 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, sucrose L. acidophilus, glucose title:2_SUC_GLC description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
4 GSM49628 3_GLC_FOS 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, glucose L. acidophilus, fructooligosaccharide title:3_GLC_FOS description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
5 GSM49629 4_RAF_GLC 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, raffinose L. acidophilus, glucose title:4_RAF_GLC description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
6 GSM49630 5_GLC_LAC 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, glucose L. acidophilus, lactose title:5_GLC_LAC description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
7 GSM49631 6_GAL_GLC 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, galactose L. acidophilus, glucose title:6_GAL_GLC description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
8 GSM49632 7_GLC_TRE 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, glucose L. acidophilus, trehalose title:7_GLC_TRE description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
9 GSM49633 8_FRU_SUC 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, fructose L. acidophilus, sucrose title:8_FRU_SUC description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
10 GSM49634 9_FOS_FRU 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, fructooligosaccharides L. acidophilus, fructose title:9_FOS_FRU description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
11 GSM49635 10_FRU_RAF 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, fructose L. acidophilus, raffinose title:10_FRU_RAF description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
12 GSM49636 11_LAC_FRU 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, lactose L. acidophilus, fructose title:11_LAC_FRU description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
13 GSM49637 12_FRU_GAL 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, fructose L. acidophilus, galactose title:12_FRU_GAL description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
14 GSM49638 13_TRE_FRU 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, trehalose L. acidophilus, fructose title:13_TRE_FRU description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
15 GSM49639 14_SUC_FOS 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, sucrose L. acidophilus, fructooligosaccharides title:14_SUC_FOS description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
16 GSM49640 15_RAF_SUC 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, raffinose L. acidophilus, sucrose title:15_RAF_SUC description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
17 GSM49641 16_SUC_LAC 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, sucrose L. acidophilus, lactose title:16_SUC_LAC description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
18 GSM49642 17_GAL_SUC 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, galactose L. acidophilus, sucrose title:17_GAL_SUC description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
19 GSM49643 18_SUC_TRE 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, sucrose L. acidophilus, trehalose title:18_SUC_TRE description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
20 GSM49644 19_FOS_RAF 5,736 North Carolina State University 2005-04-26 [cDNA Array] Whole Genome Array L. acidophilus NCFM (GPL1401) RNA Lactobacillus acidophilus
Lactobacillus acidophilus
unclassified source_name:L. acidophilus, fructooligosaccharides L. acidophilus, raffinose title:19_FOS_RAF description:L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
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