Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,463)		   Tiling Array
(684)		   cDNA Array
(10,536)		   Oligo Array
(19,945)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(877)		   Other
(57)		   All
(39,613)		  
  brain
(118)		   blood
(703)		   connective
(173)		   reproductive
(145)		   muscular
(90)		   digestive
(772)		   liver
(78)		   lung
(255)		   urinary
(19)		   endo/exo-crine
(198)		   embryo
(42)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(225)		   unclassified
(36,795)		   all
(39,613)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1161280 DE 0 corpogen 2013-06-12 [HT Sequencing] Illumina HiSeq 2000 (Mycobacterium tuberculosis H37Rv) (GPL17280) SRA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv		 unclassified source_name:Culture in Dubos: exponential phase title:DE
2 GSM1161281 DS 0 corpogen 2013-06-12 [HT Sequencing] Illumina HiSeq 2000 (Mycobacterium tuberculosis H37Rv) (GPL17280) SRA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv		 unclassified source_name:Culture in Dubos: Stationary phase title:DS
3 GSM1161282 FE 0 corpogen 2013-06-12 [HT Sequencing] Illumina HiSeq 2000 (Mycobacterium tuberculosis H37Rv) (GPL17280) SRA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv		 unclassified source_name:Culture in Long Fatty Acids: exponential phase title:FE
4 GSM1161283 FS 0 corpogen 2013-06-12 [HT Sequencing] Illumina HiSeq 2000 (Mycobacterium tuberculosis H37Rv) (GPL17280) SRA Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv		 unclassified source_name:Culture in Long Fatty Acids: Stationary phase title:FS
5 GSM1149833 Control 10' 0 Biological Research Centre, Szeged 2013-05-29 [HT Sequencing] AB SOLiD 4 System (Sinorhizobium meliloti 1021) (GPL17212) SRA Sinorhizobium meliloti 1021
Sinorhizobium meliloti 1021		 unclassified source_name:bacterial culture title:Control 10'
6 GSM1149834 NCR247 10' 0 Biological Research Centre, Szeged 2013-05-29 [HT Sequencing] AB SOLiD 4 System (Sinorhizobium meliloti 1021) (GPL17212) SRA Sinorhizobium meliloti 1021
Sinorhizobium meliloti 1021		 unclassified source_name:bacterial culture title:NCR247 10'
7 GSM1149835 NCR335 10' 0 Biological Research Centre, Szeged 2013-05-29 [HT Sequencing] AB SOLiD 4 System (Sinorhizobium meliloti 1021) (GPL17212) SRA Sinorhizobium meliloti 1021
Sinorhizobium meliloti 1021		 unclassified source_name:bacterial culture title:NCR335 10'
8 GSM1149836 Control 30' 0 Biological Research Centre, Szeged 2013-05-29 [HT Sequencing] AB SOLiD 4 System (Sinorhizobium meliloti 1021) (GPL17212) SRA Sinorhizobium meliloti 1021
Sinorhizobium meliloti 1021		 unclassified source_name:bacterial culture title:Control 30'
9 GSM1149837 NCR247 30' 0 Biological Research Centre, Szeged 2013-05-29 [HT Sequencing] AB SOLiD 4 System (Sinorhizobium meliloti 1021) (GPL17212) SRA Sinorhizobium meliloti 1021
Sinorhizobium meliloti 1021		 unclassified source_name:bacterial culture title:NCR247 30'
10 GSM1149838 NCR335 30' 0 Biological Research Centre, Szeged 2013-05-29 [HT Sequencing] AB SOLiD 4 System (Sinorhizobium meliloti 1021) (GPL17212) SRA Sinorhizobium meliloti 1021
Sinorhizobium meliloti 1021		 unclassified source_name:bacterial culture title:NCR335 30'
11 GSM1149845 R. sphaeroides 2.4.1 anaerob 0 Justus-Liebig University Gießen 2013-05-29 [HT Sequencing] Illumina HiSeq 2000 (Rhodobacter sphaeroides 2.4.1) (GPL17213) SRA Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:bacterial cells title:R. sphaeroides 2.4.1 anaerob description:Note from submitter: R._sphaeroides_2.4.1_anaerob_forward.wig and R._sphaeroides_2.4.1_anaerob_div_by_4349519.0_multi_by_4349519.0_forward.wig are identical. They are the same files as for the mentioned file the normalization leads to the same outcome as without the normalizatoin- still I would keep it in the set as people usually load all normalized files together into a genome browser and might be confused if those are missing.
12 GSM1149846 R. sphaeroides 2.4.1 microaerob 0 Justus-Liebig University Gießen 2013-05-29 [HT Sequencing] Illumina HiSeq 2000 (Rhodobacter sphaeroides 2.4.1) (GPL17213) SRA Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:bacterial cells title:R. sphaeroides 2.4.1 microaerob
13 GSM1149847 R. sphaeroides 2.4.1 iron depletion anaerob 0 Justus-Liebig University Gießen 2013-05-29 [HT Sequencing] Illumina HiSeq 2000 (Rhodobacter sphaeroides 2.4.1) (GPL17213) SRA Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:bacterial cells title:R. sphaeroides 2.4.1 iron depletion anaerob
14 GSM1149848 R. sphaeroides 2.4.1 iron depletion microaerob 0 Justus-Liebig University Gießen 2013-05-29 [HT Sequencing] Illumina HiSeq 2000 (Rhodobacter sphaeroides 2.4.1) (GPL17213) SRA Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1		 unclassified source_name:bacterial cells title:R. sphaeroides 2.4.1 iron depletion microaerob
15 GSM1149049 B. subtilis remA+ vs remA- Replicate 1 4,888 New York University 2013-05-28 [Oligo Array] Agilent-029629 b.subt-final-sense-3probes-july29 [Gene-level version] (GPL15179) RNA Bacillus subtilis
Bacillus subtilis		 unclassified source_name:epsH-, sinR- cells epsH-, sinR-, remA- cells title:B. subtilis remA+ vs remA- Replicate 1 description:Biological replicate 1 of 3. B. sutilis strain 3610 remA+,epsH-, sinR- vs remA-, epsH-, sinR- cells harvested in MSgg medium at and optical denisty (600nm) between 1.0-1.1
16 GSM1149050 B. subtilis remA+ vs remA- Replicate 2 4,888 New York University 2013-05-28 [Oligo Array] Agilent-029629 b.subt-final-sense-3probes-july29 [Gene-level version] (GPL15179) RNA Bacillus subtilis
Bacillus subtilis		 unclassified source_name:epsH-, sinR- cells epsH-, sinR-, remA- cells title:B. subtilis remA+ vs remA- Replicate 2 description:Biological replicate 2 of 3. B. sutilis strain 3610 remA+,epsH-, sinR- vs remA-, epsH-, sinR- cells harvested in MSgg medium at and optical denisty (600nm) between 1.0-1.2
17 GSM1149051 B. subtilis remA+ vs remA- Replicate 3 4,888 New York University 2013-05-28 [Oligo Array] Agilent-029629 b.subt-final-sense-3probes-july29 [Gene-level version] (GPL15179) RNA Bacillus subtilis
Bacillus subtilis		 unclassified source_name:epsH-, sinR- cells epsH-, sinR-, remA- cells title:B. subtilis remA+ vs remA- Replicate 3 description:Biological replicate 3 of 3. B. sutilis strain 3610 remA+,epsH-, sinR- vs remA-, epsH-, sinR- cells harvested in MSgg medium at and optical denisty (600nm) between 1.0-1.3
18 GSM1147058 S.avermitilis ATCC31267_day2_rep1 7,633 China Agricultural University 2013-05-23 [Oligo Array] Agilent-020986 Streptomyces avermitilis MA-4680 microarray (GPL17193) RNA Streptomyces avermitilis
Streptomyces avermitilis		 pooled ATCC31267 mycelia, day 2, replicate 1
19 GSM1147059 S.avermitilis ATCC31267_day6_rep1 7,633 China Agricultural University 2013-05-23 [Oligo Array] Agilent-020986 Streptomyces avermitilis MA-4680 microarray (GPL17193) RNA Streptomyces avermitilis
Streptomyces avermitilis		 pooled ATCC31267 mycelia, day 6, replicate 1
20 GSM1147060 S.avermitilis 76-02-e_day2_rep1 7,633 China Agricultural University 2013-05-23 [Oligo Array] Agilent-020986 Streptomyces avermitilis MA-4680 microarray (GPL17193) RNA Streptomyces avermitilis
Streptomyces avermitilis		 pooled 76-02-e mycelia, day 2, replicate 1
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