Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(987)
  Primates
(0)
  Rodents
(490)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(196)
  Bacteria
(227)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(2,852)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(12)
  Tiling Array
(0)
  cDNA Array
(24)
  Oligo Array
(190)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(1)
  All
(227)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(227)
  all
(227)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1261645 SL1344_wildtype_BR1 42,021 Moyne Institute of Preventive Medicine 2013-11-08 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) mixed Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
unclassified source_name:RNA_SL1344 cells grown to OD600nm 0.3 genomic DNA_SL1344 cells grown to OD600nm 0.3 title:SL1344_wildtype_BR1 description:Sample 1; biological replicate 1
2 GSM1261646 SL1344_wildtype_BR2 42,021 Moyne Institute of Preventive Medicine 2013-11-08 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) mixed Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
unclassified source_name:RNA_SL1344 cells grown to OD600nm 0.3 genomic DNA_SL1344 cells grown to OD600nm 0.3 title:SL1344_wildtype_BR2 description:Sample 2; biological replicate 2
3 GSM1261647 SL1344_wildtype_BR3 42,021 Moyne Institute of Preventive Medicine 2013-11-08 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) mixed Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
unclassified source_name:RNA_SL1344 cells grown to OD600nm 0.3 genomic DNA_SL1344 cells grown to OD600nm 0.3 title:SL1344_wildtype_BR3 description:Sample 3; biological replicate 3
4 GSM1261648 SL1344_swap_BR1 42,021 Moyne Institute of Preventive Medicine 2013-11-08 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) mixed Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
unclassified source_name:RNA_SL1344(swap) cells grown to OD600nm 0.3 genomic DNA_SL1344 cells grown to OD600nm 0.3 title:SL1344_swap_BR1 description:Sample 4; biological replicate 1
5 GSM1261649 SL1344_swap_BR2 42,021 Moyne Institute of Preventive Medicine 2013-11-08 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) mixed Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
unclassified source_name:RNA_SL1344(swap) cells grown to OD600nm 0.3 genomic DNA_SL1344 cells grown to OD600nm 0.3 title:SL1344_swap_BR2 description:Sample 5; biological replicate 2
6 GSM1261650 SL1344_swap_BR3 42,021 Moyne Institute of Preventive Medicine 2013-11-08 [Oligo Array] Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 (GPL10008) mixed Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
unclassified source_name:RNA_SL1344(swap) cells grown to OD600nm 0.3 genomic DNA_SL1344 cells grown to OD600nm 0.3 title:SL1344_swap_BR3 description:Sample 6; biological replicate 3
7 GSM1209634 CSH50 control (mock igG) E-minimal medium replicate 1 43,450 Trinity College Dublin 2013-08-15 [Oligo Array] Agilent-019492 Project-0160-002 (GPL17580) genomic Escherichia coli K-12
Escherichia coli K-12
unclassified source_name:CSH50 control E-minimal medium 90 min title:CSH50 control (mock igG) E-minimal medium replicate 1
8 GSM1209635 CSH50 control (mock igG) E-minimal medium replicate 2 43,450 Trinity College Dublin 2013-08-15 [Oligo Array] Agilent-019492 Project-0160-002 (GPL17580) genomic Escherichia coli K-12
Escherichia coli K-12
unclassified source_name:CSH50 control E-minimal medium 90 min title:CSH50 control (mock igG) E-minimal medium replicate 2
9 GSM1209636 CSH50 E-minimal medium pH 7 90 min replicate 1 43,450 Trinity College Dublin 2013-08-15 [Oligo Array] Agilent-019492 Project-0160-002 (GPL17580) genomic Escherichia coli K-12
Escherichia coli K-12
unclassified source_name:CSH50 E-minimal medium pH 7 90 min title:CSH50 E-minimal medium pH 7 90 min replicate 1
10 GSM1209637 CSH50 E-minimal medium pH 7 90 min replicate 2 43,450 Trinity College Dublin 2013-08-15 [Oligo Array] Agilent-019492 Project-0160-002 (GPL17580) genomic Escherichia coli K-12
Escherichia coli K-12
unclassified source_name:CSH50 E-minimal medium pH 7 90 min title:CSH50 E-minimal medium pH 7 90 min replicate 2
11 GSM1209638 CSH50 E-minimal medium pH 7 90 min replicate 3 43,450 Trinity College Dublin 2013-08-15 [Oligo Array] Agilent-019492 Project-0160-002 (GPL17580) genomic Escherichia coli K-12
Escherichia coli K-12
unclassified source_name:CSH50 E-minimal medium pH 7 90 min title:CSH50 E-minimal medium pH 7 90 min replicate 3
12 GSM1209639 CSH50 E-minimal medium pH 4.5 90 min replicate 1 43,450 Trinity College Dublin 2013-08-15 [Oligo Array] Agilent-019492 Project-0160-002 (GPL17580) genomic Escherichia coli K-12
Escherichia coli K-12
unclassified source_name:CSH50 E-minimal medium pH 4.5 90 min title:CSH50 E-minimal medium pH 4.5 90 min replicate 1
13 GSM1209640 CSH50 E-minimal medium pH 4.5 90 min replicate 2 43,450 Trinity College Dublin 2013-08-15 [Oligo Array] Agilent-019492 Project-0160-002 (GPL17580) genomic Escherichia coli K-12
Escherichia coli K-12
unclassified source_name:CSH50 E-minimal medium pH 4.5 90 min title:CSH50 E-minimal medium pH 4.5 90 min replicate 2
14 GSM1209641 CSH50 E-minimal medium pH 4.5 90 min replicate 3 43,450 Trinity College Dublin 2013-08-15 [Oligo Array] Agilent-019492 Project-0160-002 (GPL17580) genomic Escherichia coli K-12
Escherichia coli K-12
unclassified source_name:CSH50 E-minimal medium pH 4.5 90 min title:CSH50 E-minimal medium pH 4.5 90 min replicate 3
15 GSM1149839 UCC2003 grown in melibiose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate 10,807 University College Cork 2013-05-29 [Oligo Array] Bifidobacterium breve UCC2003 Agilent 2x11K format (GPL8878) RNA Bifidobacterium breve UCC2003,Bifidobacterium breve
Bifidobacterium breve UCC2003,Bifidobacterium breve
unclassified source_name:Bifidobacterium breve UCC2003 grown on melibiose as the sole carbohydrate source Bifidobacterium breve UCC2003 grown on ribose as the sole carbohydrate source title:UCC2003 grown in melibiose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate description:gene expression array
16 GSM1149840 UCC2003 grown in melezitose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate 10,807 University College Cork 2013-05-29 [Oligo Array] Bifidobacterium breve UCC2003 Agilent 2x11K format (GPL8878) RNA Bifidobacterium breve UCC2003,Bifidobacterium breve
Bifidobacterium breve UCC2003,Bifidobacterium breve
unclassified source_name:Bifidobacterium breve UCC2003 grown on Melezitose as the sole carbohydrate source Bifidobacterium breve UCC2003 grown on ribose as the sole carbohydrate source title:UCC2003 grown in melezitose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate description:gene expression array
17 GSM1149841 UCC2003 grown in raffinose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate 10,807 University College Cork 2013-05-29 [Oligo Array] Bifidobacterium breve UCC2003 Agilent 2x11K format (GPL8878) RNA Bifidobacterium breve UCC2003,Bifidobacterium breve
Bifidobacterium breve UCC2003,Bifidobacterium breve
unclassified source_name:Bifidobacterium breve UCC2003 grown on raffinose as the sole carbohydrate source Bifidobacterium breve UCC2003 grown on ribose as the sole carbohydrate source title:UCC2003 grown in raffinose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate description:gene expression array
18 GSM1149842 UCC2003 grown in stachyose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate 10,807 University College Cork 2013-05-29 [Oligo Array] Bifidobacterium breve UCC2003 Agilent 2x11K format (GPL8878) RNA Bifidobacterium breve UCC2003,Bifidobacterium breve
Bifidobacterium breve UCC2003,Bifidobacterium breve
unclassified source_name:Bifidobacterium breve UCC2003 grown on stachyose as the sole carbohydrate source Bifidobacterium breve UCC2003 grown on ribose as the sole carbohydrate source title:UCC2003 grown in stachyose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate description:gene expression array
19 GSM1149843 UCC2003 grown in sucrose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate 10,807 University College Cork 2013-05-29 [Oligo Array] Bifidobacterium breve UCC2003 Agilent 2x11K format (GPL8878) RNA Bifidobacterium breve UCC2003,Bifidobacterium breve
Bifidobacterium breve UCC2003,Bifidobacterium breve
unclassified source_name:Bifidobacterium breve UCC2003 grown on sucrose as the sole carbohydrate source Bifidobacterium breve UCC2003 grown on ribose as the sole carbohydrate source title:UCC2003 grown in sucrose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate description:gene expression array
20 GSM1149844 UCC2003 grown in sucrose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate (dye-swap) 10,807 University College Cork 2013-05-29 [Oligo Array] Bifidobacterium breve UCC2003 Agilent 2x11K format (GPL8878) RNA Bifidobacterium breve UCC2003,Bifidobacterium breve
Bifidobacterium breve UCC2003,Bifidobacterium breve
unclassified source_name:Bifidobacterium breve UCC2003 grown on sucrose as the sole carbohydrate source Bifidobacterium breve UCC2003 grown on ribose as the sole carbohydrate source title:UCC2003 grown in sucrose as sole carbohydrate versus UCC2003 grown on ribose as sole carbohydrate (dye-swap) description:gene expression array
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