Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)
  Primates
(4,928)
  Rodents
(181,106)
  Mammals
(16,260)
  Vertebrates
(18,263)
  Invertebrates
(37,338)
  Plants
(91,454)
  Bacteria
(39,082)
  Viruses
(1,266)
  Phages
(101)
  Unclassified
(5,242)
  All
(898,944)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(7,355)
  Tiling Array
(676)
  cDNA Array
(10,532)
  Oligo Array
(19,682)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(51)
  HT-Seq
(729)
  Other
(57)
  All
(39,082)
 
  brain
(118)
  blood
(706)
  connective
(170)
  reproductive
(108)
  muscular
(90)
  digestive
(772)
  liver
(78)
  lung
(251)
  urinary
(19)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(0)
  all
(39,082)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM999270 telavancin resistant strain vs. parent strain-rep3 5,087 Illinois State University 2012-09-07 [Oligo Array] JCVI PFGRC Staphylococcus aureus 16K v9 array designed primarily based on strain COL (GPL10591) RNA Staphylococcus aureus
Staphylococcus aureus
unclassified source_name:sample collected at OD600 at 0.4 title:telavancin resistant strain vs. parent strain-rep3 description:Analysis used MED1951 RNA as control samples for comparison to MED1952 S. aureus RNA samples.
2 GSM999269 telavancin resistant strain vs. parent strain-rep2 5,087 Illinois State University 2012-09-07 [Oligo Array] JCVI PFGRC Staphylococcus aureus 16K v9 array designed primarily based on strain COL (GPL10591) RNA Staphylococcus aureus
Staphylococcus aureus
unclassified source_name:sample collected at OD600 at 0.4 title:telavancin resistant strain vs. parent strain-rep2 description:Analysis used MED1951 RNA as control samples for comparison to MED1952 S. aureus RNA samples.
3 GSM999268 telavancin resistant strain vs. parent strain-rep1 5,087 Illinois State University 2012-09-07 [Oligo Array] JCVI PFGRC Staphylococcus aureus 16K v9 array designed primarily based on strain COL (GPL10591) RNA Staphylococcus aureus
Staphylococcus aureus
unclassified source_name:sample collected at OD600 at 0.4 title:telavancin resistant strain vs. parent strain-rep1 description:Analysis used MED1951 RNA as control samples for comparison to MED1952 S. aureus RNA samples.
4 GSM999252 E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep2 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7
unclassified source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 4h of treatment title:E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep2 description:Gene expression data from cinnamaldehyde treatment at 4 h
5 GSM999251 E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep1 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7
unclassified source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 4h of treatment title:E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep1 description:Gene expression data from cinnamaldehyde treatment at 4 h
6 GSM999250 E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep2 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7
unclassified source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 2h of treatment title:E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep2 description:Gene expression data from cinnamaldehyde treatment at 2 h
7 GSM999249 E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep1 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7
unclassified source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 2h of treatment title:E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep1 description:Gene expression data from cinnamaldehyde treatment at 2 h
8 GSM999248 E. coli O157:H7 at 4 h control biological rep2 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7
unclassified source_name:E. coli O157:H7 control, sampled at 4h of treatment title:E. coli O157:H7 at 4 h control biological rep2 description:Gene expression data from control at 4 h
9 GSM999247 E. coli O157:H7 at 4 h control biological rep1 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7
unclassified source_name:E. coli O157:H7 control, sampled at 4h of treatment title:E. coli O157:H7 at 4 h control biological rep1 description:Gene expression data from control at 4 h
10 GSM999246 E. coli O157:H7 at 2 h control biological rep2 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7
unclassified source_name:E. coli O157:H7 control, sampled at 2h of treatment title:E. coli O157:H7 at 2 h control biological rep2 description:Gene expression data from control at 2 h
11 GSM999245 E. coli O157:H7 at 2 h control biological rep1 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7
unclassified source_name:E. coli O157:H7 control, sampled at 2h of treatment title:E. coli O157:H7 at 2 h control biological rep1 description:Gene expression data from control at 2 h
12 GSM999080 SCV, 48h, rep3 5,900 University of Nottingham 2012-09-06 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:PA01-SCV late (48h) stationary phase title:SCV, 48h, rep3 description:Gene expression data from PA01-SCV at 48hours, late stationary phase
13 GSM999079 SCV, 48h, rep2 5,900 University of Nottingham 2012-09-06 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:PA01-SCV late (48h) stationary phase title:SCV, 48h, rep2 description:Gene expression data from PA01-SCV at 48hours, late stationary phase
14 GSM999078 SCV, 48h, rep1 5,900 University of Nottingham 2012-09-06 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:PA01-SCV late (48h) stationary phase title:SCV, 48h, rep1 description:Gene expression data from PA01-SCV at 48hours, late stationary phase
15 GSM999077 SCV, 24h, rep3 5,900 University of Nottingham 2012-09-06 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:PA01-SCV early (24h) stationary phase title:SCV, 24h, rep3 description:Gene expression data from PA01-SCV at 24hours, early stationary phase
16 GSM999076 SCV, 24h, rep2 5,900 University of Nottingham 2012-09-06 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:PA01-SCV early (24h) stationary phase title:SCV, 24h, rep2 description:Gene expression data from PA01-SCV at 24hours, early stationary phase
17 GSM999075 SCV, 24h, rep1 5,900 University of Nottingham 2012-09-06 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:PA01-SCV early (24h) stationary phase title:SCV, 24h, rep1 description:Gene expression data from PA01-SCV at 24hours, early stationary phase
18 GSM999074 WT, 48h, rep3 5,900 University of Nottingham 2012-09-06 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:WT late (48h) stationary phase title:WT, 48h, rep3 description:Gene expression data from WT at 48hours, late stationary phase
19 GSM999073 WT, 48h, rep2 5,900 University of Nottingham 2012-09-06 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:WT late (48h) stationary phase title:WT, 48h, rep2 description:Gene expression data from WT at 48hours, late stationary phase
20 GSM999072 WT, 48h, rep1 5,900 University of Nottingham 2012-09-06 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:WT late (48h) stationary phase title:WT, 48h, rep1 description:Gene expression data from WT at 48hours, late stationary phase
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