Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(28,021)		   Primates
(98)		   Rodents
(8,498)		   Mammals
(597)		   Vertebrates
(3,191)		   Invertebrates
(4,243)		   Plants
(5,065)		   Bacteria
(1,085)		   Viruses
(23)		   Phages
(45)		   Unclassified
(231)		   All
(51,111)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(120)		   Tiling Array
(0)		   cDNA Array
(536)		   Oligo Array
(421)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(8)		   All
(1,085)		  
  brain
(1)		   blood
(60)		   connective
(5)		   reproductive
(0)		   muscular
(0)		   digestive
(33)		   liver
(0)		   lung
(3)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(4)		   unclassified
(979)		   all
(1,085)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM999252 E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep2 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7		 unclassified source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 4h of treatment title:E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep2 description:Gene expression data from cinnamaldehyde treatment at 4 h
2 GSM999251 E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep1 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7		 unclassified source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 4h of treatment title:E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep1 description:Gene expression data from cinnamaldehyde treatment at 4 h
3 GSM999250 E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep2 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7		 unclassified source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 2h of treatment title:E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep2 description:Gene expression data from cinnamaldehyde treatment at 2 h
4 GSM999249 E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep1 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7		 unclassified source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 2h of treatment title:E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep1 description:Gene expression data from cinnamaldehyde treatment at 2 h
5 GSM999248 E. coli O157:H7 at 4 h control biological rep2 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7		 unclassified source_name:E. coli O157:H7 control, sampled at 4h of treatment title:E. coli O157:H7 at 4 h control biological rep2 description:Gene expression data from control at 4 h
6 GSM999247 E. coli O157:H7 at 4 h control biological rep1 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7		 unclassified source_name:E. coli O157:H7 control, sampled at 4h of treatment title:E. coli O157:H7 at 4 h control biological rep1 description:Gene expression data from control at 4 h
7 GSM999246 E. coli O157:H7 at 2 h control biological rep2 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7		 unclassified source_name:E. coli O157:H7 control, sampled at 2h of treatment title:E. coli O157:H7 at 2 h control biological rep2 description:Gene expression data from control at 2 h
8 GSM999245 E. coli O157:H7 at 2 h control biological rep1 10,208 University of Manitoba 2012-09-07 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli O157:H7
Escherichia coli O157:H7		 unclassified source_name:E. coli O157:H7 control, sampled at 2h of treatment title:E. coli O157:H7 at 2 h control biological rep1 description:Gene expression data from control at 2 h
9 GSM996502 Bacteria suspension heated to a core temperature of 71°C - Replicate 5 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 71°C title:Bacteria suspension heated to a core temperature of 71°C - Replicate 5 description:Biological replicate 5 of 5. Bacteria at 71°C compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 4 - rep5
10 GSM996501 Bacteria suspension heated to a core temperature of 71°C - Replicate 4 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 71°C title:Bacteria suspension heated to a core temperature of 71°C - Replicate 4 description:Biological replicate 4 of 5. Bacteria at 71°C compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 4 - rep4
11 GSM996500 Bacteria suspension heated to a core temperature of 71°C - Replicate 3 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 71°C title:Bacteria suspension heated to a core temperature of 71°C - Replicate 3 description:Biological replicate 3 of 5. Bacteria at 71°C compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 4 - rep3
12 GSM996499 Bacteria suspension heated to a core temperature of 71°C - Replicate 2 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 71°C title:Bacteria suspension heated to a core temperature of 71°C - Replicate 2 description:Biological replicate 2 of 5. Bacteria at 71°C compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 4 - rep2
13 GSM996498 Bacteria suspension heated to a core temperature of 71°C - Replicate 1 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 71°C title:Bacteria suspension heated to a core temperature of 71°C - Replicate 1 description:Biological replicate 1 of 5. Bacteria at 71°C compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 4 - rep1
14 GSM996497 Bacteria suspension heated at 60°C to a process lethality value of 3 - Replicate 4 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 60°C F = 3 title:Bacteria suspension heated at 60°C to a process lethality value of 3 - Replicate 4 description:Biological replicate 4 of 4. Bacteria at 60°C F = 3 compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 3 - rep4
15 GSM996496 Bacteria suspension heated at 60°C to a process lethality value of 3 - Replicate 3 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 60°C F = 3 title:Bacteria suspension heated at 60°C to a process lethality value of 3 - Replicate 3 description:Biological replicate 3 of 4. Bacteria at 60°C F = 3 compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 3 - rep3
16 GSM996495 Bacteria suspension heated at 60°C to a process lethality value of 3 - Replicate 2 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 60°C F = 3 title:Bacteria suspension heated at 60°C to a process lethality value of 3 - Replicate 2 description:Biological replicate 2 of 4. Bacteria at 60°C F = 3 compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 3 - rep2
17 GSM996494 Bacteria suspension heated at 60°C to a process lethality value of 3 - Replicate 1 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 60°C F = 3 title:Bacteria suspension heated at 60°C to a process lethality value of 3 - Replicate 1 description:Biological replicate 1 of 4. Bacteria at 60°C F = 3 compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 3 - rep1
18 GSM996493 Bacteria suspension heated at 58°C to a process lethality value of 3 - Replicate 4 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 58°C F = 3 title:Bacteria suspension heated at 58°C to a process lethality value of 3 - Replicate 4 description:Biological replicate 4 of 4. Bacteria at 58°C F = 3 compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 2 - rep4
19 GSM996492 Bacteria suspension heated at 58°C to a process lethality value of 3 - Replicate 3 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 58°C F = 3 title:Bacteria suspension heated at 58°C to a process lethality value of 3 - Replicate 3 description:Biological replicate 3 of 4. Bacteria at 58°C F = 3 compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 2 - rep3
20 GSM996491 Bacteria suspension heated at 58°C to a process lethality value of 3 - Replicate 2 9,915 UNIVERSITE LAVAL 2012-09-03 [Oligo Array] Agilent-020097 E. coli Gene Expression Microarray (Feature Number version) (GPL13360) RNA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 unclassified source_name:Control bacteria at 37°C (common reference). Total RNA isolated from 5 indepedent cultures (pooled after cDNA labeling). Bacteria at 58°C F = 3 title:Bacteria suspension heated at 58°C to a process lethality value of 3 - Replicate 2 description:Biological replicate 2 of 4. Bacteria at 58°C F = 3 compared to the common reference prepared from control bacteria at 37°C Sample name: Treatment 2 - rep2
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