Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(28,021)

Invertebrates
(4,243)

Bacteria
(1,085)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(120)

Tiling Array
(0)

cDNA Array
(536)

Oligo Array
(421)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(0)

All
(1,085)

reproductive
(0)

muscular
(0)

digestive
(33)

liver
(0)

lung
(3)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(4)

unclassified
(979)

all
(1,085)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM794226	Wild-type biofilm; biological replicate 1	5,900	University of Ottawa	2011-09-09	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa PA14	unclassified	source_name:Biofilm PA14 title:Wild-type biofilm; biological replicate 1 description:Gene expression data from biofilms
2	GSM794227	Wild-type biofilm; biological replicate 2	5,900	University of Ottawa	2011-09-09	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa PA14	unclassified	source_name:Biofilm PA14 title:Wild-type biofilm; biological replicate 2 description:Gene expression data from biofilms
3	GSM794228	Wild-type biofilm; biological replicate 3	5,900	University of Ottawa	2011-09-09	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa PA14	unclassified	source_name:Biofilm PA14 title:Wild-type biofilm; biological replicate 3 description:Gene expression data from biofilms
4	GSM794229	ndvB knockout biofilm; biological replicate 1	5,900	University of Ottawa	2011-09-09	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa PA14	unclassified	source_name:Biofilm PA14 title:ndvB knockout biofilm; biological replicate 1 description:Gene expression data from biofilms
5	GSM794230	ndvB knockout biofilm; biological replicate 2	5,900	University of Ottawa	2011-09-09	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa PA14	unclassified	source_name:Biofilm PA14 title:ndvB knockout biofilm; biological replicate 2 description:Gene expression data from biofilms
6	GSM794231	ndvB knockout biofilm; biological replicate 3	5,900	University of Ottawa	2011-09-09	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa PA14	unclassified	source_name:Biofilm PA14 title:ndvB knockout biofilm; biological replicate 3 description:Gene expression data from biofilms
7	GSM231797	Wild-type strain chi7122 exp. 1	10,208	UniversitÃƒÂ© de MontrÃƒÂ©al	2007-09-26	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli	unclassified	source_name:chi7122 exp. 1 title:Wild-type strain chi7122 exp. 1 description:The cDNA of the chi7122 strain from experience 1 was hybridized onto the GeneChip.
8	GSM231800	Wild-type strain chi7122 exp. 2	10,208	UniversitÃƒÂ© de MontrÃƒÂ©al	2007-09-26	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli	unclassified	source_name:Wild-type strain chi7122 experiment 2 title:Wild-type strain chi7122 exp. 2 description:The cDNA of the chi7122 strain from experience 2 was hybridized onto the GeneChip.
9	GSM231802	Wild-type strain chi7122 exp. 3	10,208	UniversitÃƒÂ© de MontrÃƒÂ©al	2007-09-26	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli	unclassified	source_name:Wild-type strain chi7122 experiment 3 title:Wild-type strain chi7122 exp. 3 description:The cDNA of the chi7122 strain from experience 3 was hybridized onto the GeneChip.
10	GSM231804	Wild-type strain chi7122 exp. 4	10,208	UniversitÃƒÂ© de MontrÃƒÂ©al	2007-09-26	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli	unclassified	source_name:Wild-type strain chi7122 experiment 4 title:Wild-type strain chi7122 exp. 4 description:The cDNA of the chi7122 strain from experience 4 was hybridized onto the GeneChip.
11	GSM231807	Pst mutant K3 exp. 1	10,208	UniversitÃƒÂ© de MontrÃƒÂ©al	2007-09-26	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli	unclassified	source_name:Pst mutant (K3) strain experiment 1 title:Pst mutant K3 exp. 1 description:The cDNA of the K3 strain from experience 1 was hybridized onto the GeneChip.
12	GSM231809	Pst mutant K3 exp. 2	10,208	UniversitÃƒÂ© de MontrÃƒÂ©al	2007-09-26	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli	unclassified	source_name:Pst mutant (K3) strain experiment 2 title:Pst mutant K3 exp. 2 description:The cDNA of the K3 strain from experience 2 was hybridized onto the GeneChip.
13	GSM231811	Pst mutant K3 exp. 3	10,208	UniversitÃƒÂ© de MontrÃƒÂ©al	2007-09-26	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli	unclassified	source_name:Pst mutant (K3) strain experiment 3 title:Pst mutant K3 exp. 3 description:The cDNA of the K3 strain from experience 3 was hybridized onto the GeneChip.
14	GSM231813	Pst mutant K3 exp. 4	10,208	UniversitÃƒÂ© de MontrÃƒÂ©al	2007-09-26	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli	unclassified	source_name:Pst mutant (K3) strain experiment 4 title:Pst mutant K3 exp. 4 description:The cDNA of the K3 strain from experience 4 was hybridized onto the GeneChip.
15	GSM356730	E.coli O157:H7 growth in the presence of Hep-2 cells rep 1	10,208	Hospital for Sick Children	2008-12-30	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	skin	E.coli O157:H7 growth in the presence of Hep-2 cells rep 1
16	GSM356731	E.coli O157:H7 growth in minimal media rep 1	10,208	Hospital for Sick Children	2008-12-30	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:EA2_101206W_PS02_#412 title:E.coli O157:H7 growth in minimal media rep 1 description:Gene expression profile afterE.coli O157:H7 growth in minimal media rep 1
17	GSM356732	E.coli O157:H7 growth in Penassay broth rep 1	10,208	Hospital for Sick Children	2008-12-30	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:EA2_101206W_PS01_#501 title:E.coli O157:H7 growth in Penassay broth rep 1 description:Gene expression profile afterE.coli O157:H7 growth in Penassay broth rep 1
18	GSM356733	E.coli O157:H7 growth in the presence of Hep-2 cells rep 2	10,208	Hospital for Sick Children	2008-12-30	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	skin	E.coli O157:H7 growth in the presence of Hep-2 cells rep 2
19	GSM356734	E.coli O157:H7 growth in Penassay broth rep 2	10,208	Hospital for Sick Children	2008-12-30	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:EA2_082907W_PS01_P-A10 title:E.coli O157:H7 growth in Penassay broth rep 2 description:Gene expression profile afterE.coli O157:H7 growth in Penassay broth rep 2
20	GSM356735	E.coli O157:H7 growth in the presence of Hep-2 cells rep 3	10,208	Hospital for Sick Children	2008-12-30	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	skin	E.coli O157:H7 growth in the presence of Hep-2 cells rep 3

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