Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(27,231)

Bacteria
(2,475)

Phages
(0)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(52)

Other
(5)

All
(2,475)

brain
(0)

muscular
(0)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(8)

unclassified
(2,304)

all
(2,475)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM386764	kst_trans transcriptome	0	MPI Bremen	2009-03-26	[HT Sequencing] Illumina Genome Analyzer II (Candidatus Kuenenia stuttgartiensis) (GPL9338)	SRA	Candidatus Kuenenia stuttgartiensis	unclassified	source_name:suspended cells, 90% are K stuttgartiensis, anammox enrichment culture title:kst_trans transcriptome description:library_source: Total community RNA
2	GSM594825	P. putida 30Ã‚Â°C	0	Medical School Hannover	2010-09-16	[HT Sequencing] Illumina Genome Analyzer II (Pseudomonas putida KT2440) (GPL10934)	SRA	Pseudomonas putida KT2440	unclassified	source_name:P. putida 30Ã‚Â°C title:P. putida 30Ã‚Â°C description:Supplementary processed data files include: gene expression from 30Ã‚Â°C culture at mid-exp. Phase, aligned reads only map to intergenic regions, and aligned reads only map to open reading frames
3	GSM594826	P. putida 10Ã‚Â°C	0	Medical School Hannover	2010-09-16	[HT Sequencing] Illumina Genome Analyzer II (Pseudomonas putida KT2440) (GPL10934)	SRA	Pseudomonas putida KT2440	unclassified	source_name:P. putida 10Ã‚Â°C title:P. putida 10Ã‚Â°C description:Supplementary processed data files include: gene expression from 10Ã‚Â°C culture after cold shock, aligned reads only map to intergenic regions, and aligned reads only map to open reading frames
4	GSM613995	EB-: total RNA (ACGTGC)	0	University of WÃƒÂ¼rzburg	2010-10-28	[HT Sequencing] 454 GS (Chlamydophila pneumoniae CWL029) (GPL11140)	SRA	Chlamydophila pneumoniae CWL029	unclassified	source_name:Elementary Bodies title:EB-: total RNA (ACGTGC) description:total RNA
5	GSM613996	EB-: total RNA (GTAT)	0	University of WÃƒÂ¼rzburg	2010-10-28	[HT Sequencing] 454 GS (Chlamydophila pneumoniae CWL029) (GPL11140)	SRA	Chlamydophila pneumoniae CWL029	unclassified	source_name:Elementary Bodies title:EB-: total RNA (GTAT) description:total RNA
6	GSM613997	EB+: RNA enriched for native 5' (GTGA)	0	University of WÃƒÂ¼rzburg	2010-10-28	[HT Sequencing] 454 GS (Chlamydophila pneumoniae CWL029) (GPL11140)	SRA	Chlamydophila pneumoniae CWL029	unclassified	source_name:Elementary Bodies title:EB+: RNA enriched for native 5' (GTGA) description:enriched RNA
7	GSM613998	EB+: RNA enriched for native 5' (AGCGTA)	0	University of WÃƒÂ¼rzburg	2010-10-28	[HT Sequencing] 454 GS (Chlamydophila pneumoniae CWL029) (GPL11140)	SRA	Chlamydophila pneumoniae CWL029	unclassified	source_name:Elementary Bodies title:EB+: RNA enriched for native 5' (AGCGTA) description:enriched RNA
8	GSM613999	RB-: total RNA (GTTC)	0	University of WÃƒÂ¼rzburg	2010-10-28	[HT Sequencing] 454 GS (Chlamydophila pneumoniae CWL029) (GPL11140)	SRA	Chlamydophila pneumoniae CWL029	unclassified	source_name:Reticulate Bodies title:RB-: total RNA (GTTC) description:total RNA
9	GSM614000	RB-: total RNA (AGTCAG)	0	University of WÃƒÂ¼rzburg	2010-10-28	[HT Sequencing] 454 GS (Chlamydophila pneumoniae CWL029) (GPL11140)	SRA	Chlamydophila pneumoniae CWL029	unclassified	source_name:Reticulate Bodies title:RB-: total RNA (AGTCAG) description:total RNA
10	GSM614001	RB+: RNA enriched for native 5' (TCAT)	0	University of WÃƒÂ¼rzburg	2010-10-28	[HT Sequencing] 454 GS (Chlamydophila pneumoniae CWL029) (GPL11140)	SRA	Chlamydophila pneumoniae CWL029	unclassified	source_name:Reticulate Bodies title:RB+: RNA enriched for native 5' (TCAT) description:enriched RNA
11	GSM614002	RB+: RNA enriched for native 5' (ATACTG)	0	University of WÃƒÂ¼rzburg	2010-10-28	[HT Sequencing] 454 GS (Chlamydophila pneumoniae CWL029) (GPL11140)	SRA	Chlamydophila pneumoniae CWL029	unclassified	source_name:Reticulate Bodies title:RB+: RNA enriched for native 5' (ATACTG) description:enriched RNA
12	GSM950282	Nanoarchaeum equitans sRNAs	0	MPI for terrestrial microbiology	2012-06-19	[HT Sequencing] Illumina HiSeq 2000 (Nanoarchaeum equitans) (GPL15717)	SRA	Nanoarchaeum equitans	unclassified	source_name:Cultured organism title:Nanoarchaeum equitans sRNAs description:Total small RNA (<200 bases).
13	GSM951400	Control coIP OD0.15	0	University of WÃƒÂ¼rzburg	2012-06-22	[HT Sequencing] Illumina Genome Analyzer IIx (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344) (GPL15732)	SRA	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	unclassified	source_name:Control coIP OD0.15 title:Control coIP OD0.15 description:RNA coimmunoprecipitated with anti-FLAG antibody
14	GSM951401	Control coIP OD0.5	0	University of WÃƒÂ¼rzburg	2012-06-22	[HT Sequencing] Illumina Genome Analyzer IIx (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344) (GPL15732)	SRA	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	unclassified	source_name:Control coIP OD0.5 title:Control coIP OD0.5 description:RNA coimmunoprecipitated with anti-FLAG antibody
15	GSM951403	Control coIP OD2.0	0	University of WÃƒÂ¼rzburg	2012-06-22	[HT Sequencing] Illumina Genome Analyzer IIx (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344) (GPL15732)	SRA	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	unclassified	source_name:Control coIP OD2.0 title:Control coIP OD2.0 description:RNA coimmunoprecipitated with anti-FLAG antibody
16	GSM951404	Control coIP OD2+3h	0	University of WÃƒÂ¼rzburg	2012-06-22	[HT Sequencing] Illumina Genome Analyzer IIx (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344) (GPL15732)	SRA	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	unclassified	source_name:Control coIP OD2+3h title:Control coIP OD2+3h description:RNA coimmunoprecipitated with anti-FLAG antibody
17	GSM951406	Control coIP OD2+6h	0	University of WÃƒÂ¼rzburg	2012-06-22	[HT Sequencing] Illumina Genome Analyzer IIx (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344) (GPL15732)	SRA	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	unclassified	source_name:Control coIP OD2+6h title:Control coIP OD2+6h description:RNA coimmunoprecipitated with anti-FLAG antibody
18	GSM951407	Control coIP OD2+9h	0	University of WÃƒÂ¼rzburg	2012-06-22	[HT Sequencing] Illumina Genome Analyzer IIx (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344) (GPL15732)	SRA	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	unclassified	source_name:Control coIP OD2+9h title:Control coIP OD2+9h description:RNA coimmunoprecipitated with anti-FLAG antibody
19	GSM951408	Control coIP overnight	0	University of WÃƒÂ¼rzburg	2012-06-22	[HT Sequencing] Illumina Genome Analyzer IIx (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344) (GPL15732)	SRA	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	unclassified	source_name:Control coIP overnight title:Control coIP overnight description:RNA coimmunoprecipitated with anti-FLAG antibody
20	GSM951409	Hfq coIP OD0.15	0	University of WÃƒÂ¼rzburg	2012-06-22	[HT Sequencing] Illumina Genome Analyzer IIx (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344) (GPL15732)	SRA	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	unclassified	source_name:Hfq coIP OD0.15 title:Hfq coIP OD0.15 description:RNA coimmunoprecipitated with anti-FLAG antibody

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