Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(24,627)
  Primates
(119)
  Rodents
(6,329)
  Mammals
(918)
  Vertebrates
(516)
  Invertebrates
(2,151)
  Plants
(2,843)
  Bacteria
(1,351)
  Viruses
(0)
  Phages
(0)
  Unclassified
(138)
  All
(39,084)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(224)
  Tiling Array
(3)
  cDNA Array
(196)
  Oligo Array
(924)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(4)
  Other
(0)
  All
(1,351)
 
  brain
(0)
  blood
(54)
  connective
(2)
  reproductive
(16)
  muscular
(0)
  digestive
(15)
  liver
(0)
  lung
(0)
  urinary
(8)
  endo/exo-crine
(12)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(3)
  unclassified
(1,241)
  all
(1,351)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM594825 P. putida 30°C 0 Medical School Hannover 2010-09-16 [HT Sequencing] Illumina Genome Analyzer II (Pseudomonas putida KT2440) (GPL10934) SRA Pseudomonas putida KT2440
Pseudomonas putida KT2440
unclassified source_name:P. putida 30°C title:P. putida 30°C description:Supplementary processed data files include: gene expression from 30°C culture at mid-exp. Phase, aligned reads only map to intergenic regions, and aligned reads only map to open reading frames
2 GSM594826 P. putida 10°C 0 Medical School Hannover 2010-09-16 [HT Sequencing] Illumina Genome Analyzer II (Pseudomonas putida KT2440) (GPL10934) SRA Pseudomonas putida KT2440
Pseudomonas putida KT2440
unclassified source_name:P. putida 10°C title:P. putida 10°C description:Supplementary processed data files include: gene expression from 10°C culture after cold shock, aligned reads only map to intergenic regions, and aligned reads only map to open reading frames
3 GSM602188 WT_total RNA minus rRNA 0 UW-Madison 2010-09-29 [HT Sequencing] Illumina Genome Analyzer II (Salmonella enterica subsp. enterica serovar Typhimurium) (GPL10998) SRA Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
unclassified source_name:WT title:WT_total RNA minus rRNA description:RNA from WT Salmonella
4 GSM602189 YQH_total RNA minus rRNA 0 UW-Madison 2010-09-29 [HT Sequencing] Illumina Genome Analyzer II (Salmonella enterica subsp. enterica serovar Typhimurium) (GPL10998) SRA Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium
unclassified source_name:yqhC mutant title:YQH_total RNA minus rRNA description:RNA from yqhC mutant
5 GSM563609 Sf301_LB_Lag_rep1 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB_Lag_rep1 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB medium, in lag phase. It is the first of three wild-type biological replicates used in this experiment, each from separate cultures.
6 GSM563610 Sf301_LB_Lag_rep2 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB_Lag_rep2 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB medium, in lag phase. It is the seond of three wild-type biological replicates used in this experiment, each from separate cultures.
7 GSM563611 Sf301_LB_Lag_rep3 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB_Lag_rep3 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB medium, in lag phase. It is the third of three wild-type biological replicates used in this experiment, each from separate cultures.
8 GSM563612 Sf301_LB_Log_rep1 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB_Log_rep1 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB medium, in log phase. It is the first of three wild-type biological replicates used in this experiment, each from separate cultures.
9 GSM563613 Sf301_LB_Log_rep2 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB_Log_rep2 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB medium, in log phase. It is the seond of three wild-type biological replicates used in this experiment, each from separate cultures.
10 GSM563614 Sf301_LB_Log_rep3 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB_Log_rep3 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB medium, in log phase. It is the third of three wild-type biological replicates used in this experiment, each from separate cultures.
11 GSM563615 Sf301_LB_Sta_rep1 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB_Sta_rep1 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB medium, in stationary phase. It is the first of three wild-type biological replicates used in this experiment, each from separate cultures.
12 GSM563616 Sf301_LB_Sta_rep2 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB_Sta_rep2 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB medium, in stationary phase. It is the seond of three wild-type biological replicates used in this experiment, each from separate cultures.
13 GSM563617 Sf301_LB_Sta_rep3 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB_Sta_rep3 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB medium, in stationary phase. It is the third of three wild-type biological replicates used in this experiment, each from separate cultures.
14 GSM563618 Sf301_LB+Con_Log_rep1 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB+Con_Log_rep1 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB+0.01% congo red medium, in log phase. It is the first of three wild-type biological replicates used in this experiment, each from separate cultures.
15 GSM563619 Sf301_LB+Con_Log_rep2 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB+Con_Log_rep2 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB+0.01% congo red medium, in log phase. It is the seond of three wild-type biological replicates used in this experiment, each from separate cultures.
16 GSM563620 Sf301_LB+Con_Log_rep3 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB+Con_Log_rep3 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB+0.01% congo red medium, in log phase. It is the third of three wild-type biological replicates used in this experiment, each from separate cultures.
17 GSM563621 Sf301_LB+Con_Sta_rep1 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB+Con_Sta_rep1 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB+0.01% congo red medium, in stationary phase. It is the first of three wild-type biological replicates used in this experiment, each from separate cultures.
18 GSM563622 Sf301_LB+Con_Sta_rep2 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB+Con_Sta_rep2 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB+0.01% congo red medium, in stationary phase. It is the seond of three wild-type biological replicates used in this experiment, each from separate cultures.
19 GSM563623 Sf301_LB+Con_Sta_rep3 389,307 Chinese center for disease control and prevention 2010-07-07 [Oligo Array] Sf301_Nimblegen_380k array (GPL10653) RNA Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
unclassified source_name:Shigella flexneri 2a strain 301 wild-type title:Sf301_LB+Con_Sta_rep3 description:This sample is of wild-type Shigella flexneri 2a strain 301 at 37℃ in LB+0.01% congo red medium, in stationary phase. It is the third of three wild-type biological replicates used in this experiment, each from separate cultures.
20 GSM570257 Bsub_AH024_LPDM_exp_rep1 383,149 Trinity College Dublin 2010-07-26 [Oligo Array] BaSysBio Bacillus subtilis T1 385K array version 1 [070910_basysbio_expr] (GPL8486) RNA Bacillus subtilis
Bacillus subtilis
unclassified source_name:Bacillus subtilis strain AH024, LPDM, exponential growth phase title:Bsub_AH024_LPDM_exp_rep1 description:This sample is of Bacillus subtilis strain AH024 grown in LPDM and harvested during exponential growth phase. It is the first of three AH024 biological replicates used in this experiment, each from separate cultures.
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