Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(28,971)
  Primates
(89)
  Rodents
(7,954)
  Mammals
(744)
  Vertebrates
(774)
  Invertebrates
(2,181)
  Plants
(2,767)
  Bacteria
(1,374)
  Viruses
(236)
  Phages
(0)
  Unclassified
(665)
  All
(45,839)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(228)
  Tiling Array
(74)
  cDNA Array
(128)
  Oligo Array
(914)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(8)
  HT-Seq
(22)
  Other
(0)
  All
(1,374)
 
  brain
(0)
  blood
(11)
  connective
(8)
  reproductive
(8)
  muscular
(0)
  digestive
(60)
  liver
(0)
  lung
(8)
  urinary
(4)
  endo/exo-crine
(4)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(1,271)
  all
(1,374)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM697301 E. coli O157:H7 EDL933 in LB at 37oC at 7 hrs incubation 10,208 Yeungnam University 2011-03-24 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
unclassified source_name:rna extracted from e. coli o157: H7 EDL933 cells grown (7 hrs incubation) in LB at 37ºC title:E. coli O157:H7 EDL933 in LB at 37oC at 7 hrs incubation description:RNA extracted from E. coli EDL933 cells grown for 7 hrs in LB at 37ºC
2 GSM697302 E. coli O157:H7 EDL933 in LB at 37oC at 7 hrs incubation with phloretin 10,208 Yeungnam University 2011-03-24 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
unclassified source_name:rna extracted from e. coli o157: H7 EDL933 cells grown (7 hrs incubation) in LB at 37ºC with 0.05 mg/ml Phloretin title:E. coli O157:H7 EDL933 in LB at 37oC at 7 hrs incubation with phloretin description:RNA extracted from E. coli EDL933 cells grown for 7 hrs in LB at 37ºC plus phloretin
3 GSM698078 E. coli O157:H7 EDL933 in LB at 37oC for 7 hrs incubation 10,208 Yeungnam University 2011-03-25 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
unclassified source_name:rna extracted from e. coli o157: H7 EDL933 cells grown (7 hrs incubation) in LB at 37ºC title:E. coli O157:H7 EDL933 in LB at 37oC for 7 hrs incubation description:RNA extracted from E. coli EDL933 cells grown on glass wool for 7 hrs in LB at 37ºC
4 GSM698079 E. coli O157:H7 EDL933 in LB at 37oC for 7 hrs incubation with honey 10,208 Yeungnam University 2011-03-26 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
unclassified source_name:rna extracted from e. coli o157: H7 EDL933 cells grown (7 hrs incubation) in LB at 37ºC with 0.5% honey title:E. coli O157:H7 EDL933 in LB at 37oC for 7 hrs incubation with honey description:RNA extracted from E. coli EDL933 cells grown on glass wool for 7 hrs in LB at 37ºC plus honey
5 GSM698080 P. aeruginosa PAO1 in LB for 7h biofilm cells 5,900 Yeungnam University 2011-03-26 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:rna extracted from p. aeruginosa pao1 cells grown for 7 h on glass wool in lb at 37C title:P. aeruginosa PAO1 in LB for 7h biofilm cells description:In the present study, we performed global gene expression analyses using Affymetrix GeneChip® P. aeruginosa Genome arrays. The sample preparation was performed according to the instructions and recommendations provided by the manufacturer. RNA extracted from biofilm cells of P. aeruginosa PAO1 wild type after 7 h of growth in LB at 37oC
6 GSM698081 P. aeruginosa PAO1 LB 1% Streptomyces 230 for 7h biofilm cells 5,900 Yeungnam University 2011-03-26 [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) RNA Pseudomonas aeruginosa
Pseudomonas aeruginosa
unclassified source_name:rna extracted from biofilm cells of p. aeruginosa pao1 grown for 7 h on glass wool in lb at 37C with 1% of streptomyces supernatant 230 title:P. aeruginosa PAO1 LB 1% Streptomyces 230 for 7h biofilm cells description:In the present study, we performed global gene expression analyses using Affymetrix GeneChip® P. aeruginosa Genome arrays. The sample preparation was performed according to the instructions and recommendations provided by the manufacturer. RNA extracted from biofilm cells of P. aeruginosa PAO1 wild type after 7 h of growth in LB at 37oC plus 1% Streptomyces 230
7 GSM663763 B31 vs rrp1 mutant replicate 1 7,904 UT Southwestern Medical Center 2011-01-31 [Oligo Array] Borrelia burgdorferi 70-mer oligoarray (GPL6778) RNA Borrelia burgdorferi
Borrelia burgdorferi
unclassified source_name:mutant parental strain title:B31 vs rrp1 mutant replicate 1 description:B31 vs rrp1 mutant replicate 1
8 GSM663764 B31 vs rrp1 mutant replicate 1 (dye swap) 7,904 UT Southwestern Medical Center 2011-01-31 [Oligo Array] Borrelia burgdorferi 70-mer oligoarray (GPL6778) RNA Borrelia burgdorferi
Borrelia burgdorferi
unclassified source_name:parental strain rrp1 mutant title:B31 vs rrp1 mutant replicate 1 (dye swap) description:B31 vs rrp1 mutant replicate 1 (dye swap)
9 GSM663765 B31 vs rrp1 mutant replicate 2 7,904 UT Southwestern Medical Center 2011-01-31 [Oligo Array] Borrelia burgdorferi 70-mer oligoarray (GPL6778) RNA Borrelia burgdorferi
Borrelia burgdorferi
unclassified source_name:mutant parental strain title:B31 vs rrp1 mutant replicate 2 description:B31 vs rrp1 mutant replicate 2
10 GSM663766 B31 vs rrp1 mutant replicate 2 (dye swap) 7,904 UT Southwestern Medical Center 2011-01-31 [Oligo Array] Borrelia burgdorferi 70-mer oligoarray (GPL6778) RNA Borrelia burgdorferi
Borrelia burgdorferi
unclassified source_name:parental strain rrp1 mutant title:B31 vs rrp1 mutant replicate 2 (dye swap) description:B31 vs rrp1 mutant replicate 2 (dye swap)
11 GSM663767 B31 vs rrp1 mutant replicate 3 7,904 UT Southwestern Medical Center 2011-01-31 [Oligo Array] Borrelia burgdorferi 70-mer oligoarray (GPL6778) RNA Borrelia burgdorferi
Borrelia burgdorferi
unclassified source_name:mutant parental strain title:B31 vs rrp1 mutant replicate 3 description:B31 vs rrp1 mutant replicate 3
12 GSM663768 B31 vs rrp1 mutant replicate 3 (dye swap) 7,904 UT Southwestern Medical Center 2011-01-31 [Oligo Array] Borrelia burgdorferi 70-mer oligoarray (GPL6778) RNA Borrelia burgdorferi
Borrelia burgdorferi
unclassified source_name:parental strain rrp1 mutant title:B31 vs rrp1 mutant replicate 3 (dye swap) description:B31 vs rrp1 mutant replicate 3 (dye swap)
13 GSM684949 Malish7_XTC_rep1 0 Urmite 2011-03-02 [HT Sequencing] Illumina Genome Analyzer (Rickettsia conorii str. Malish 7) (GPL13245) SRA Rickettsia conorii str. Malish 7
Rickettsia conorii str. Malish 7
unclassified source_name:Reference strain title:Malish7_XTC_rep1
14 GSM689838 HTCC1062 log phase light biorep1 3,144 University of Wisconsin-Madison 2011-03-11 [GeneChip] Candidatus Pelagibacter ubique OSU_SAR11_affychip (GPL7330) RNA Candidatus Pelagibacter ubique HTCC1062
Candidatus Pelagibacter ubique HTCC1062
unclassified source_name:Bacteria, SAR11 strain HTCC1062, exponential phase title:HTCC1062 log phase light biorep1
15 GSM689839 HTCC1062 log phase light biorep2 3,144 University of Wisconsin-Madison 2011-03-11 [GeneChip] Candidatus Pelagibacter ubique OSU_SAR11_affychip (GPL7330) RNA Candidatus Pelagibacter ubique HTCC1062
Candidatus Pelagibacter ubique HTCC1062
unclassified source_name:Bacteria, SAR11 strain HTCC1062, exponential phase title:HTCC1062 log phase light biorep2
16 GSM689840 HTCC1062 log phase light biorep3 3,144 University of Wisconsin-Madison 2011-03-11 [GeneChip] Candidatus Pelagibacter ubique OSU_SAR11_affychip (GPL7330) RNA Candidatus Pelagibacter ubique HTCC1062
Candidatus Pelagibacter ubique HTCC1062
unclassified source_name:Bacteria, SAR11 strain HTCC1062, exponential phase title:HTCC1062 log phase light biorep3
17 GSM689841 HTCC1062 log phase dark biorep1 3,144 University of Wisconsin-Madison 2011-03-11 [GeneChip] Candidatus Pelagibacter ubique OSU_SAR11_affychip (GPL7330) RNA Candidatus Pelagibacter ubique HTCC1062
Candidatus Pelagibacter ubique HTCC1062
unclassified source_name:Bacteria, SAR11 strain HTCC1062, exponential phase title:HTCC1062 log phase dark biorep1
18 GSM689842 HTCC1062 log phase dark biorep2 3,144 University of Wisconsin-Madison 2011-03-11 [GeneChip] Candidatus Pelagibacter ubique OSU_SAR11_affychip (GPL7330) RNA Candidatus Pelagibacter ubique HTCC1062
Candidatus Pelagibacter ubique HTCC1062
unclassified source_name:Bacteria, SAR11 strain HTCC1062, exponential phase title:HTCC1062 log phase dark biorep2
19 GSM689843 HTCC1062 log phase dark biorep3 3,144 University of Wisconsin-Madison 2011-03-11 [GeneChip] Candidatus Pelagibacter ubique OSU_SAR11_affychip (GPL7330) RNA Candidatus Pelagibacter ubique HTCC1062
Candidatus Pelagibacter ubique HTCC1062
unclassified source_name:Bacteria, SAR11 strain HTCC1062, exponential phase title:HTCC1062 log phase dark biorep3
20 GSM697642 HTCC1062 Light to Dark-1 3,144 University of Wisconsin-Madison 2011-03-24 [GeneChip] Candidatus Pelagibacter ubique OSU_SAR11_affychip (GPL7330) RNA Candidatus Pelagibacter ubique HTCC1062
Candidatus Pelagibacter ubique HTCC1062
unclassified source_name:Bacteria, SAR11 strain HTCC1062 title:HTCC1062 Light to Dark-1
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